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SCN18_13_7_16_R1_B_scaffold_322

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Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_322_1
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..890)
DNA (888bp) protein (296aa)
Beta-ketoadipyl CoA thiolase n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0IZH9_COMT2
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KGH31897.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
beta-ketoadipyl CoA thiolase
SCN18_13_7_16_R1_B_scaffold_322_2
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(848..1555)
DNA (708bp) protein (236aa)
3-oxoacid CoA-transferase, B subunit {ECO:0000313|EMBL:EER58504.1}; EC=2.8.3.6 {ECO:0000313|EMBL:EER58504.1};; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
3-oxoacid CoA-transferase subunit B (EC:2.8.3.6)
3-oxoacid CoA-transferase, B subunit n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TAJ5_ACIDE
SCN18_13_7_16_R1_B_scaffold_322_3
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1583..2299)
DNA (717bp) protein (239aa)
3-oxoacid CoA-transferase subunit A (EC:2.8.3.6)
3-oxoacid CoA-transferase, A subunit n=1 Tax=Polaromonas sp. CF318 RepID=J3DDZ4_9BURK
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCN18_13_7_16_R1_B_scaffold_322_4
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2469..3287
DNA (819bp) protein (273aa)
Transcriptional regulator, IclR family n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VKK3_POLNA
beta-ketoadipate pathway transcription regulator
Transcriptional regulator, IclR family {ECO:0000313|EMBL:ABM36181.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCN18_13_7_16_R1_B_scaffold_322_5
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3524..3883
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J1EH60_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJE51621.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_322_6
SCN_Clostridium_9x, SCN_Clostridium_9x, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3972..5693)
DNA (1722bp) protein (574aa)
X-Pro dipeptidyl-peptidase domain-containing protein n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=D6A002_9ACTO
X-Pro dipeptidyl-peptidase domain-containing protein {ECO:0000313|EMBL:EFE65395.2}; TaxID=566461 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ghanaensis ATCC 14672.;"
hydrolase CocE/NonD family protein
SCN18_13_7_16_R1_B_scaffold_322_7
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5714..6712)
DNA (999bp) protein (333aa)
Extra-cytoplasmic solute receptor family protein 92 n=1 Tax=Acidovorax sp. NO-1 RepID=H0BTT0_9BURK
Extra-cytoplasmic solute receptor family protein 92 {ECO:0000313|EMBL:EHL24346.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
Uncharacterized protein UPF0065
SCN18_13_7_16_R1_B_scaffold_322_8
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6941..7885
DNA (945bp) protein (315aa)
LysR family transcriptional regulator n=1 Tax=Ralstonia sp. PBA RepID=I9BR43_9RALS
LysR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
SCN18_13_7_16_R1_B_scaffold_322_9
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8071..8757)
DNA (687bp) protein (229aa)
Cytochrome c class I n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9U6_ACIDE
Cytochrome c class I {ECO:0000313|EMBL:EER58755.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
cytochrome c class i
SCN18_13_7_16_R1_B_scaffold_322_10
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8850..9692
DNA (843bp) protein (281aa)
ATPase family associated with various cellular activities (AAA) {ECO:0000313|EMBL:EWS64555.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
ATPase central domain-containing protein id=5083811 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
AAA ATPase
SCN18_13_7_16_R1_B_scaffold_322_11
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9696..9908
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9U4_ACIDE
hypothetical protein
Tax=GWA2_Curvibacter_64_110_curated
SCN18_13_7_16_R1_B_scaffold_322_12
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9938..10540
DNA (603bp) protein (201aa)
GCN5 family N-acetyltransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035F7EF2
Acetyltransferases, including N-acetylases of ribosomal proteins {ECO:0000313|EMBL:GAD23698.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
N-acetyltransferase GCN5
SCN18_13_7_16_R1_B_scaffold_322_13
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10559..11746
DNA (1188bp) protein (396aa)
von Willebrand factor A n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037A5C02
VWA containing CoxE family protein {ECO:0000313|EMBL:GAD23705.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_322_14
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11850..13715
DNA (1866bp) protein (622aa)
Outer membrane protein n=1 Tax=Polaromonas sp. CF318 RepID=J3DDY7_9BURK
surface antigen (D15)
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCN18_13_7_16_R1_B_scaffold_322_15
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13715..17683
DNA (3969bp) protein (1323aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VKJ5_POLNA
Uncharacterized protein {ECO:0000313|EMBL:ABM36173.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_322_trna_1
unknown

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17810..17881
DNA (72bp)
transferRNA Arg
SCN18_13_7_16_R1_B_scaffold_322_16
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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18058..19293
DNA (1236bp) protein (412aa)
integrase family protein id=5083728 bin=GWF1_Burkholderiales_GWF1_66_17 species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
integrase family protein
Tax=GWE1_Burkholderiales_65_30_curated
SCN18_13_7_16_R1_B_scaffold_322_17
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19395..19760
DNA (366bp) protein (122aa)
Putative uncharacterized protein n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0J158_COMT2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY33747.1}; TaxID=688245 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (strain CNB-2).;"
SCN18_13_7_16_R1_B_scaffold_322_18
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19847..20347
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21UL0_RHOFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD70543.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCN18_13_7_16_R1_B_scaffold_322_19
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20445..20702
DNA (258bp) protein (86aa)
Prophage CP4-57 regulatory n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TSH9_ALIDB
Prophage cp4-57 regulatory {ECO:0000313|EMBL:GAO27328.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
prophage cp4-57 regulatory
SCN18_13_7_16_R1_B_scaffold_322_20
CN-SCN_Lautropia_89x, CN-SCN_Lautropia_89x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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20702..21583
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5W6C9_BURSC
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
SCN18_13_7_16_R1_B_scaffold_322_21
SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, Phage

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21583..22713
DNA (1131bp) protein (377aa)
Uncharacterized protein {ECO:0000313|EMBL:EXI77148.1}; TaxID=1454003 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-92.;"
Bifunctional DNA primase/polymerase id=4208462 bin=GWF2_Planctomycetes_42_9 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_322_22
Nitrosospira multiformis_SCNPILOT_SOLID_1_TRIM150_Nitrosospira_54_27, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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22955..24181
DNA (1227bp) protein (409aa)
Major capsid protein HK97 n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TSH4_ALIDB
Capsid protein {ECO:0000313|EMBL:KGH17068.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
major capsid protein hk97
SCN18_13_7_16_R1_B_scaffold_322_23
SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, Phage

Not on your lists

24192..24725
DNA (534bp) protein (178aa)
peptidase U35 n=1 Tax=Comamonas sp. B-9 RepID=UPI0003956F28
HK97 family phage prohead protease {ECO:0000313|EMBL:GAO22271.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
HK97 family phage prohead protease
SCN18_13_7_16_R1_B_scaffold_322_24
SCNPILOT_SOLID2_TRIM150_Phage_1, SCNPILOT_SOLID2_TRIM150_Phage_1, SCNPILOT_SOLID2_TRIM150_Phage_1, SCNPILOT_SOLID2_TRIM150_Phage_1, SCNPILOT_SOLID2_TRIM150_Phage_1, Phage

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24716..25960
DNA (1245bp) protein (415aa)
HK97 family phage portal protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HZ53_9BURK
HK97 family phage portal protein
HK97 family phage portal protein {ECO:0000313|EMBL:AFU46132.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_13_7_16_R1_B_scaffold_322_25
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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25932..26309
DNA (378bp) protein (126aa)
Hnh endonuclease n=1 Tax=Acidovorax sp. KKS102 RepID=K0IAE0_9BURK
hnh endonuclease
Hnh endonuclease {ECO:0000313|EMBL:AFU46131.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_13_7_16_R1_B_scaffold_322_26
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26306..26764
DNA (459bp) protein (153aa)
Putative TerS protein n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UCP8_ADVKW
putative TerS protein
Putative TerS protein {ECO:0000313|EMBL:AFK62786.1}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001); (Tetrathiobacter kashmirensis).;"
SCN18_13_7_16_R1_B_scaffold_322_27
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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26761..28260
DNA (1500bp) protein (500aa)
Terminase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TSG9_ALIDB
Terminase {ECO:0000313|EMBL:KJS23860.1}; TaxID=1629711 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. BRH_c35.;"
terminase
SCN18_13_7_16_R1_B_scaffold_322_28
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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28410..28679
DNA (270bp) protein (90aa)
Uncharacterized phage DNA packaging-like protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GG59_ALIDK
Uncharacterized protein {ECO:0000313|EMBL:KGH17062.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
phage DNA packaging-like protein
SCN18_13_7_16_R1_B_scaffold_322_29
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28682..28999
DNA (318bp) protein (106aa)
Phage head-tail adaptor n=1 Tax=Acidovorax sp. KKS102 RepID=K0HZ48_9BURK
phage head-tail adaptor
Phage head-tail adaptor {ECO:0000313|EMBL:AFU46127.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Displaying items 1-30 of 73 in total

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