ggKbase home page

SCN18_13_7_16_R1_B_scaffold_585

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_585_1
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

133..639
DNA (507bp) protein (169aa)
Sel1-like n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21Z03_RHOFD
Uncharacterized protein {ECO:0000313|EMBL:CDS48030.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
Sel1-like protein
SCN18_13_7_16_R1_B_scaffold_585_2
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

661..993
DNA (333bp) protein (111aa)
DNA-binding protein, excisionase family n=1 Tax=Kytococcus sedentarius (strain ATCC 14392 / DSM 20547 / CCM 314 / 541) RepID=C7NIY6_KYTSD
excisionase family DNA-binding protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCN18_13_7_16_R1_B_scaffold_585_3
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1204..1500)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XB45_DELAC
Uncharacterized protein {ECO:0000313|EMBL:KEH11375.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_585_4
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1484..1753)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WFX2_DELAC
Uncharacterized protein {ECO:0000313|EMBL:KEH11376.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_585_5
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1853..3046
DNA (1194bp) protein (398aa)
Benzoate transporter n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WCN9_ACISJ
benzoate transporter
Benzoate transporter {ECO:0000313|EMBL:ABM44014.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCN18_13_7_16_R1_B_scaffold_585_6
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3084..4043
DNA (960bp) protein (320aa)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
glutathione synthetase (EC:6.3.2.3)
glutathione synthetase n=1 Tax=Variovorax paradoxus RepID=UPI00037D06C0
SCN18_13_7_16_R1_B_scaffold_585_7
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4339..5415
DNA (1077bp) protein (359aa)
Acyltransferase 3 n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W8B3_ACISJ
Acyltransferase {ECO:0000313|EMBL:EXU81346.1}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
acyltransferase 3
SCN18_13_7_16_R1_B_scaffold_585_8
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5484..7211
DNA (1728bp) protein (576aa)
hypothetical protein id=5081801 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
SCN18_13_7_16_R1_B_scaffold_585_9
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7309..8076)
DNA (768bp) protein (256aa)
Glutamine amidotransferase class-II n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V4D3_VARPE
Variovorax paradoxus strain MEDvA23 contig_54, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27470.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
glutamine amidotransferase class-ii
SCN18_13_7_16_R1_B_scaffold_585_10
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8090..8326)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTW2_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK92652.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_585_11
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8386..8769
DNA (384bp) protein (128aa)
TraR/DksA family transcriptional regulator id=12549711 bin=BDI species=Brachymonas chironomi genus=Brachymonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
TraR/DksA family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCN18_13_7_16_R1_B_scaffold_585_12
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8881..11100)
DNA (2220bp) protein (740aa)
malate synthase G (EC:2.3.3.9)
Malate synthase G {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572}; EC=2.3.3.9 {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
Malate synthase G n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q593_ACIAP
SCN18_13_7_16_R1_B_scaffold_585_13
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11265..11879)
DNA (615bp) protein (205aa)
glucose dehydrogenase n=1 Tax=Sinorhizobium medicae RepID=UPI00036C0207
Glucose dehydrogenase
Glucose dehydrogenase {ECO:0000313|EMBL:CDN55555.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCN18_13_7_16_R1_B_scaffold_585_14
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11992..12903
DNA (912bp) protein (304aa)
Transcriptional regulator, LysR family n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TJ78_ACIAC
LysR family transcriptional regulator
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCN18_13_7_16_R1_B_scaffold_585_15
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12914..13366
DNA (453bp) protein (151aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI000367C865
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EJL78665.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCN18_13_7_16_R1_B_scaffold_585_16
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13370..14203
DNA (834bp) protein (278aa)
YdjC family protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T5R9_ACIDE
YdjC family protein {ECO:0000313|EMBL:EER60180.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_585_17
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14200..15831
DNA (1632bp) protein (544aa)
Glycosyl transferase family 39 n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T5S0_ACIDE
Glycosyl transferase, family 39 {ECO:0000313|EMBL:GAO22524.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
glycosyl transferase family protein
SCN18_13_7_16_R1_B_scaffold_585_18
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15748..16122)
DNA (375bp) protein (125aa)
GtrA family protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T5S1_ACIDE
GtrA family protein {ECO:0000313|EMBL:EER60182.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
GtrA-like protein
SCN18_13_7_16_R1_B_scaffold_585_19
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16119..17090)
DNA (972bp) protein (324aa)
Glycosyl transferase family 2 n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T5S2_ACIDE
Glycosyl transferase family 2 {ECO:0000313|EMBL:EER60183.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
glycosyl transferase family protein
SCN18_13_7_16_R1_B_scaffold_585_20
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17160..17465)
DNA (306bp) protein (102aa)
phosphate starvation-inducible protein PsiF n=1 Tax=Herbaspirillum lusitanum RepID=UPI00030DDAB5
Phosphate starvation-inducible protein PsiF {ECO:0000313|EMBL:EGF33451.1}; TaxID=937450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae.;" source="Oxalobacteraceae bacterium IMCC9480.;"
PsiF repeat-containing protein
SCN18_13_7_16_R1_B_scaffold_585_21
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17624..19297
DNA (1674bp) protein (558aa)
arginyl-tRNA synthetase n=1 Tax=Curvibacter lanceolatus RepID=UPI00037B39E2
argS; arginyl-tRNA synthetase
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCN18_13_7_16_R1_B_scaffold_585_22
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19314..20030
DNA (717bp) protein (239aa)
Sporulation domain protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CJC5_VARPS
sporulation domain-containing protein
Sporulation domain protein {ECO:0000313|EMBL:ACS17125.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCN18_13_7_16_R1_B_scaffold_585_23
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20115..20750
DNA (636bp) protein (212aa)
Thiol:disulfide interchange protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YEX7_9BURK
Thiol:disulfide interchange protein {ECO:0000256|PIRNR:PIRNR001488}; TaxID=667019 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter.;" source="Curvibacter putative symbiont of Hydra magnipapillata.;"
DSBA oxidoreductase
SCN18_13_7_16_R1_B_scaffold_585_24
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20876..21514
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y4M8_RAMTT
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCN18_13_7_16_R1_B_scaffold_585_25
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21511..22290
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y4M9_RAMTT
ABC transporter ATP-binding protein
Uncharacterized protein {ECO:0000313|EMBL:AEG91347.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCN18_13_7_16_R1_B_scaffold_585_26
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22311..23858
DNA (1548bp) protein (516aa)
RNA polymerase sigma-54 factor n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVE0_ALIDB
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
RNA polymerase sigma-54 factor, rpon
SCN18_13_7_16_R1_B_scaffold_585_27
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23874..24326
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I6E1_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU48145.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_13_7_16_R1_B_scaffold_585_28
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24323..25636
DNA (1314bp) protein (438aa)
Putative RNA methylase n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TJ91_ACIAC
putative RNA methylase
Putative RNA methylase {ECO:0000313|EMBL:ABM31029.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCN18_13_7_16_R1_B_scaffold_585_29
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25641..26546)
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035D4F54
Uncharacterized protein {ECO:0000313|EMBL:KGH32427.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
LysR family transcriptional regulator
SCN18_13_7_16_R1_B_scaffold_585_30
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26646..27812
DNA (1167bp) protein (389aa)
carnitine dehydratase n=1 Tax=Variovorax paradoxus RepID=UPI00037BE3F7
L-carnitine dehydratase/bile acid-inducible protein F
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ABM58966.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
Displaying items 1-30 of 42 in total

View Taxonomy