ggKbase home page

SCN18_13_7_16_R1_B_scaffold_822

Search features with annotation key words

Displaying items 1-30 of 52 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_822_1
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..348)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI00037DEDFA
Putative integral membrane protein {ECO:0000313|EMBL:EWC61673.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_822_2
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

412..843
DNA (432bp) protein (144aa)
Thioesterase superfamily protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I7ZGQ8_9GAMM
Thioesterase superfamily protein {ECO:0000313|EMBL:EIT71069.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
thioesterase superfamily protein
SCN18_13_7_16_R1_B_scaffold_822_3
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

840..1976
DNA (1137bp) protein (379aa)
putative zinc-type alcohol dehydrogenase transmembrane protein (EC:1.1.1.1)
Putative zinc-type alcohol dehydrogenase transmembrane protein {ECO:0000313|EMBL:AHH96587.1}; EC=1.1.1.1 {ECO:0000313|EMBL:AHH96587.1};; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
alcohol dehydrogenase n=1 Tax=Actinomadura flavalba RepID=UPI000362C49C
SCN18_13_7_16_R1_B_scaffold_822_4
Streptomyces turgidiscabies, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1984..3372)
DNA (1389bp) protein (463aa)
Tat pathway signal sequence domain protein n=1 Tax=Streptomyces turgidiscabies Car8 RepID=L7F7U5_9ACTO
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:ELP66760.1}; TaxID=698760 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces turgidiscabies Car8.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_822_5
unknown

Not on your lists

comp(3480..3932)
DNA (453bp) protein (151aa)

This feature has no annotations

SCN18_13_7_16_R1_B_scaffold_822_6
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4208..5416
DNA (1209bp) protein (403aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI000380D4DF
Multidrug resistance protein mdtL
Multidrug resistance protein mdtL {ECO:0000313|EMBL:AGZ38871.1}; TaxID=1246995 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
SCN18_13_7_16_R1_B_scaffold_822_7
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5651..6163
DNA (513bp) protein (171aa)
Uncharacterized protein n=31 Tax=Escherichia RepID=I2PGP8_ECOLX
Toxin {ECO:0000313|EMBL:KJZ12367.1}; TaxID=43658 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas rubra.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_822_8
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6188..6562
DNA (375bp) protein (125aa)
SCN18_13_7_16_R1_B_scaffold_822_trna_2
unknown

Not on your lists

comp(6641..6714)
DNA (74bp)
transferRNA Arg
SCN18_13_7_16_R1_B_scaffold_822_9
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6729..8990)
DNA (2262bp) protein (754aa)
SCN18_13_7_16_R1_B_scaffold_822_10
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9065..9724)
DNA (660bp) protein (220aa)
Peptide methionine sulfoxide reductase msrA (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) (Modular protein) {ECO:0000313|EMBL:CCF86176.1}; EC=1.8.4.11 {ECO:0000313|EMBL:CCF86176.1};; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
peptide methionine sulfoxide reductase (EC:1.8.4.11)
Peptide methionine sulfoxide reductase msrA (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) (Modular protein) n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4ENB3_9CHLR
SCN18_13_7_16_R1_B_scaffold_822_11
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9768..11471)
DNA (1704bp) protein (568aa)
Uncharacterized protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FBZ0_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB51405.1}; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCN18_13_7_16_R1_B_scaffold_822_12
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

11592..12128
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Patulibacter medicamentivorans RepID=H0E0T9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EHN12703.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_822_13
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12240..13166)
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Patulibacter medicamentivorans RepID=H0E7V1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EHN10241.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
SCN18_13_7_16_R1_B_scaffold_822_14
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13355..14158
DNA (804bp) protein (268aa)
Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit n=1 Tax=Saccharomonospora cyanea NA-134 RepID=H5XFP4_9PSEU
Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit {ECO:0000313|EMBL:EHR60436.1}; TaxID=882082 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora cyanea NA-134.;"
3-oxoadipate:succinyl-CoA transferase subunit A
SCN18_13_7_16_R1_B_scaffold_822_15
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14155..14880
DNA (726bp) protein (242aa)
3-oxoadipate CoA-transferase subunit B Glutaconate CoA-transferase subunit B {ECO:0000313|EMBL:CEL17159.1}; EC=2.8.3.12 {ECO:0000313|EMBL:CEL17159.1};; EC=2.8.3.6 {ECO:0000313|EMBL:CEL17159.1};; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
glutaconate CoA-transferase (EC:2.8.3.12)
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI00037F091A
SCN18_13_7_16_R1_B_scaffold_822_16
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14880..16064
DNA (1185bp) protein (395aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ACU96347.1}; EC=2.3.1.9 {ECO:0000313|EMBL:ACU96347.1};; TaxID=471857 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 /; NBRC 12207 / P101).;"
Acetyl-CoA acetyltransferase n=1 Tax=Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101) RepID=C7MPV2_SACVD
SCN18_13_7_16_R1_B_scaffold_822_17
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16073..17020
DNA (948bp) protein (316aa)
Pca regulon regulatory protein PcaR n=1 Tax=Patulibacter medicamentivorans RepID=H0E7U9_9ACTN
Pca regulon regulatory protein PcaR {ECO:0000313|EMBL:EHN10239.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
transcriptional regulator, IclR family
SCN18_13_7_16_R1_B_scaffold_822_18
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17036..17821)
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Arthrobacter sp. M2012083 RepID=UPI0003194DA9
Oxidoreductase {ECO:0000313|EMBL:KEG44165.1}; TaxID=66897 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseorubens.;"
short chain dehydrogenase/reductase oxidoreductase
SCN18_13_7_16_R1_B_scaffold_822_19
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17808..18986)
DNA (1179bp) protein (393aa)
potA4; spermidine/putrescine import ATP-binding protein PotA (EC:3.6.3.31)
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X3H0_RHIFR
Spermidine/putrescine ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGJ02102.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
SCN18_13_7_16_R1_B_scaffold_822_20
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18983..20737)
DNA (1755bp) protein (585aa)
Putative membrane protein n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PHI5_RHIML
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGJ02101.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
SCN18_13_7_16_R1_B_scaffold_822_21
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20789..21991)
DNA (1203bp) protein (401aa)
Plasmid pRM41A complete sequence n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0P3Q4_RHIML
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGJ02100.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
SCN18_13_7_16_R1_B_scaffold_822_22
SCN_Clostridium_9x, SCN_Clostridium_9x, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22074..22820)
DNA (747bp) protein (249aa)
3-oxoacyl-(Acyl-carrier-protein) reductase n=2 Tax=Cyanothece RepID=B7K6D5_CYAP8
3-oxoacyl-ACP reductase
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:ACK68188.1}; TaxID=41431 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 8801) (Synechococcus sp. (strain PCC 8801 /; RF-1)).;"
SCN18_13_7_16_R1_B_scaffold_822_23
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22917..23738)
DNA (822bp) protein (274aa)
Bacilysin biosynthesis oxidoreductase BacC {ECO:0000313|EMBL:CDN44527.1}; EC=1.-.-.- {ECO:0000313|EMBL:CDN44527.1};; Flags: Fragment;; TaxID=483908 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. P22.;"
Uncharacterized protein (Fragment) n=2 Tax=Setaria italica RepID=K3ZZI0_SETIT
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
SCN18_13_7_16_R1_B_scaffold_822_24
CN-SCN_Lautropia_15x, CN-SCN_Lautropia_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23738..24673)
DNA (936bp) protein (312aa)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Burkholderia multivorans CF2 RepID=J4S5X5_9BURK
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein {ECO:0000313|EMBL:AJZ61797.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
SCN18_13_7_16_R1_B_scaffold_822_25
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24670..25863)
DNA (1194bp) protein (398aa)
Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|SAAS:SAAS00022796}; EC=1.4.4.2 {ECO:0000256|SAAS:SAAS00022796};; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
gcvPb; glycine dehydrogenase subunit 2 (EC:1.4.4.2)
Glycinee dehydrogenase [decarboxylating] (Glycinee cleavage system P2 protein) n=1 Tax=Patulibacter medicamentivorans RepID=H0E7U7_9ACTN
SCN18_13_7_16_R1_B_scaffold_822_26
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26164..27564)
DNA (1401bp) protein (467aa)
Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|SAAS:SAAS00022796}; EC=1.4.4.2 {ECO:0000256|SAAS:SAAS00022796};; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
glycine dehydrogenase subunit 1 n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003B35D2B
glycine dehydrogenase
SCN18_13_7_16_R1_B_scaffold_822_27
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27578..28708)
DNA (1131bp) protein (377aa)
NAD(+)/NADH kinase n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=B3PK13_CELJU
NAD+ kinase
Tax=RBG_16_RIF_CHLX_72_14_curated
SCN18_13_7_16_R1_B_scaffold_822_28
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28710..29996)
DNA (1287bp) protein (429aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IXB4_9BURK
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000313|EMBL:EIF35366.1}; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_822_29
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30174..31643
DNA (1470bp) protein (490aa)
Succinate-semialdehyde dehydrogenase [NADP+] n=1 Tax=Patulibacter medicamentivorans RepID=H0E7C0_9ACTN
succinate-semialdehyde dehydrogenase
Tax=BJP_IG2103_Rhodocyclales_63_50
Displaying items 1-30 of 52 in total

View Taxonomy