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SCN18_10_11_15_R5_P_scaffold_3

Search features with annotation key words

Displaying items 31-60 of 835 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R5_P_scaffold_3_31
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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30115..30888
DNA (774bp) protein (258aa)
Thiamin (Thiazole moiety) biosynthesis protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z3A3_AZOL4
Adenylyltransferase {ECO:0000313|EMBL:KJR67171.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
thiF; thiamin (thiazole moiety) biosynthesis protein
SCN18_10_11_15_R5_P_scaffold_3_32
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30956..31582
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002EBB23D
Putative glutathione S-transferase-like protein {ECO:0000313|EMBL:CDZ94525.1}; TaxID=1499686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 20_BN.;"
glutathione S-transferase
SCN18_10_11_15_R5_P_scaffold_3_33
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31623..36155
DNA (4533bp) protein (1511aa)
Branched-chain amino acid transport system permease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IJX0_9BRAD
Branched-chain amino acid transport system permease {ECO:0000313|EMBL:ERF84080.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
GAF sensor hybrid histidine kinase
SCN18_10_11_15_R5_P_scaffold_3_34
unknown

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36263..36472
DNA (210bp) protein (70aa)

This feature has no annotations

SCN18_10_11_15_R5_P_scaffold_3_35
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(36555..37364)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035FA11A
Phyllosphere-induced regulator PhyR {ECO:0000313|EMBL:KKC26755.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
two-component response regulator
SCN18_10_11_15_R5_P_scaffold_3_36
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37670..38323
DNA (654bp) protein (218aa)
RNA polymerase sigma factor n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G781_9RHIZ
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=314231 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Fulvimarina.;" source="Fulvimarina pelagi HTCC2506.;"
RNA polymerase sigma factor
SCN18_10_11_15_R5_P_scaffold_3_37
CN-SCN_Phenylobacterium_14x, CN-SCN_Phenylobacterium_14x, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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38334..40016
DNA (1683bp) protein (561aa)
Signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HP41_PARL1
Sensory transduction histidine kinase {ECO:0000313|EMBL:CDO60003.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
signal transduction histidine kinase
SCN18_10_11_15_R5_P_scaffold_3_38
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40041..41027)
DNA (987bp) protein (329aa)
Lactate dehydrogenase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2ZBA0_9PROT
Lactate dehydrogenase {ECO:0000313|EMBL:EME71695.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
lactate dehydrogenase and related dehydrogenase
SCN18_10_11_15_R5_P_scaffold_3_39
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(41119..41943)
DNA (825bp) protein (275aa)
Putative transcriptional regulator n=1 Tax=Caulobacter sp. AP07 RepID=J2HBH3_9CAUL
XRE family transcriptional regulator {ECO:0000313|EMBL:KGM32653.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
XRE family transcriptional regulator
SCN18_10_11_15_R5_P_scaffold_3_40
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42123..42674
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SRN1_RHOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCG07560.1}; TaxID=1150469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhodospirillum photometricum DSM 122.;"
SCN18_10_11_15_R5_P_scaffold_3_41
SCN_Rubrivivax_15x, SCN_Rubrivivax_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(42681..44033)
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=beta proteobacterium L13 RepID=UPI00035CE8DD
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KJB95188.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
FAD dependent oxidoreductase
SCN18_10_11_15_R5_P_scaffold_3_42
unknown

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comp(44132..44242)
DNA (111bp) protein (37aa)

This feature has no annotations

SCN18_10_11_15_R5_P_scaffold_3_43
SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, Verrucomicrobia

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44432..45199
DNA (768bp) protein (256aa)
Gln/Arg/Lys/His transport ATP-binding protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BTS8_GRABC
Gln/Arg/Lys/His transport ATP-binding protein
Gln/Arg/Lys/His transport ATP-binding protein {ECO:0000313|EMBL:ABI61774.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
SCN18_10_11_15_R5_P_scaffold_3_44
SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, Verrucomicrobia

Not on your lists

45208..46704
DNA (1497bp) protein (499aa)
amino acid ABC transporter permease n=1 Tax=Synergistetes bacterium JGI 0000079-D21 RepID=UPI0003B6104A
Gln/Arg/Lys/His-binding protein and permease protein
Gln/Arg/Lys/His-binding protein and permease protein {ECO:0000313|EMBL:AHJ62701.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
SCN18_10_11_15_R5_P_scaffold_3_45
SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46724..47314)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JUX5_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCN18_10_11_15_R5_P_scaffold_3_46
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47329..48678)
DNA (1350bp) protein (450aa)
Anaerobic glycerol-3-phosphate dehydrogenase subunit C n=1 Tax=Oceanibaculum indicum P24 RepID=K2J5L2_9PROT
Glycerol-3-phosphate dehydrogenase subunit C {ECO:0000313|EMBL:KJB95469.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
anaerobic glycerol-3-phosphate dehydrogenase subunit C
SCN18_10_11_15_R5_P_scaffold_3_47
SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48825..49241)
DNA (417bp) protein (139aa)
Acetylglutamate kinase protein n=1 Tax=alpha proteobacterium RS24 RepID=U2WAV3_9PROT
Rubrerythrin {ECO:0000313|EMBL:GAK43826.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
rubrerythrin
SCN18_10_11_15_R5_P_scaffold_3_48
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49471..49890)
DNA (420bp) protein (140aa)
Ferric uptake regulator, Fur family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZA2_PARL1
Ferric uptake regulator family protein {ECO:0000313|EMBL:GAK43825.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
ferric uptake regulator family protein
SCN18_10_11_15_R5_P_scaffold_3_49
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49926..51317)
DNA (1392bp) protein (464aa)
Major facilitator protein n=7 Tax=Rhizobium meliloti RepID=F7X3Y2_SINMM
major facilitator superfamily protein
Major facilitator superfamily protein {ECO:0000313|EMBL:EHK75161.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
SCN18_10_11_15_R5_P_scaffold_3_50
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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51418..52314
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZPX6_RHILW
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACI55096.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCN18_10_11_15_R5_P_scaffold_3_51
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52541..53071
DNA (531bp) protein (177aa)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064161}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064166};; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA {ECO:0000256|HAMAP-Rule:MF_00405}; Beta-hydroxydecanoyl thioester dehydrase {ECO:0000256|HAMAP-Rule:MF_00405}; Trans-2-decenoyl-[acyl-carrier-protein] isomerase {ECO:0000256|HAMAP-Rule:MF_00405}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
fabA; 3-hydroxydecanoyl-ACP dehydratase (EC:4.2.1.60)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JSA0_9PROT
SCN18_10_11_15_R5_P_scaffold_3_52
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53110..54333
DNA (1224bp) protein (408aa)
3-oxoacyl-ACP synthase {ECO:0000313|EMBL:KGM34783.1}; EC=2.3.1.41 {ECO:0000313|EMBL:KGM34783.1};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC:2.3.1.41)
3-oxoacyl-ACP synthase n=1 Tax=Methylomonas sp. MK1 RepID=UPI00035C1E20
SCN18_10_11_15_R5_P_scaffold_3_53
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54355..55155
DNA (801bp) protein (267aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RRS7_9RHIZ
fabI1; enoyl-[acyl-carrier-protein] reductase (NADH)
SCN18_10_11_15_R5_P_scaffold_3_54
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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55319..56350
DNA (1032bp) protein (344aa)
GGDEF domain n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W9B2_MAGSA
GGDEF domain-containing protein
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:KIL99164.1}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
SCN18_10_11_15_R5_P_scaffold_3_55
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56400..57479
DNA (1080bp) protein (360aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CTS1_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS20259.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCN18_10_11_15_R5_P_scaffold_3_56
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57490..58659)
DNA (1170bp) protein (390aa)
Peptidase dimerization n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=D9X7T2_STRVR
Peptidase {ECO:0000313|EMBL:EWM15261.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
peptidase dimerization protein
SCN18_10_11_15_R5_P_scaffold_3_57
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58656..60233)
DNA (1578bp) protein (526aa)
ABC transporter substrate-binding protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00036A0086
dipeptide/oligopeptide ABC transporter periplasmic protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCN18_10_11_15_R5_P_scaffold_3_58
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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60314..60784
DNA (471bp) protein (157aa)
osmotically inducible protein C n=1 Tax=Ruegeria conchae RepID=UPI000237935F
Osmotically inducible protein C {ECO:0000313|EMBL:ETX10274.1}; TaxID=1122207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas ushuaiensis DSM 15871.;"
OsmC family protein
SCN18_10_11_15_R5_P_scaffold_3_59
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60781..61626
DNA (846bp) protein (282aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJ02_9BURK
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EHR73643.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hydrolase
SCN18_10_11_15_R5_P_scaffold_3_60
Enterobacter cloacae_SCNPILOT_CONT_500_P_Enterobacter_55_6.1, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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61623..62183
DNA (561bp) protein (187aa)
Diamine N-acetyltransferase {ECO:0000313|EMBL:EFV95097.1}; EC=2.3.1.57 {ECO:0000313|EMBL:EFV95097.1};; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
Diamine N-acetyltransferase n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWJ3_9BURK
spermidine acetyltransferase
Displaying items 31-60 of 835 in total

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