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SCN18_10_11_15_R4_P_scaffold_535

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R4_P_scaffold_535_1
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..167)
DNA (165bp) protein (55aa)
Transketolase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98B19_RHILO
transketolase
Transketolase {ECO:0000313|EMBL:BAB52153.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCN18_10_11_15_R4_P_scaffold_535_2
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

545..1432
DNA (888bp) protein (296aa)
LysR family transcriptional regulator n=1 Tax=Thauera sp. 28 RepID=N6ZCD6_9RHOO
LysR family transcriptional regulator {ECO:0000313|EMBL:ENO81530.1}; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
transcriptional regulator, LysR family
SCN18_10_11_15_R4_P_scaffold_535_3
SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, Bacteria

Not on your lists

comp(1632..1961)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YM19_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM25011.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
SCN18_10_11_15_R4_P_scaffold_535_4
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2091..3014
DNA (924bp) protein (308aa)
Transcriptional regulator n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98I74_RHILO
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:BAB49642.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCN18_10_11_15_R4_P_scaffold_535_5
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3455..4360)
DNA (906bp) protein (302aa)
Transcriptional regulator, LysR family n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IMG0_METNO
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACL58346.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCN18_10_11_15_R4_P_scaffold_535_6
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4716..6599
DNA (1884bp) protein (628aa)
TRAP dicarboxylate transporter subunit DctM n=1 Tax=Methylobacterium sp. GXF4 RepID=I9X1G3_9RHIZ
DctQ protein {ECO:0000313|EMBL:BAQ46462.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
TRAP dicarboxylate transporter, dctQ-M fusion permease
SCN18_10_11_15_R4_P_scaffold_535_7
SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6664..7458
DNA (795bp) protein (265aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IMG2_METNO
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACL58348.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCN18_10_11_15_R4_P_scaffold_535_8
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7498..8754
DNA (1257bp) protein (419aa)
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IMG3_METNO
Ribulose 1,5-bisphosphate carboxylase {ECO:0000313|EMBL:KFG68897.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
RuBisCO-like protein
SCN18_10_11_15_R4_P_scaffold_535_9
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8751..10121
DNA (1371bp) protein (457aa)
Type III effector Hrp-dependent outers n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IMG4_METNO
Type III effector {ECO:0000313|EMBL:KFG68898.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
type III effector Hrp-dependent protein
SCN18_10_11_15_R4_P_scaffold_535_10
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10152..10937
DNA (786bp) protein (262aa)
3-oxoacyl-ACP reductase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00037D2D6D
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACA16225.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCN18_10_11_15_R4_P_scaffold_535_11
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10989..12008
DNA (1020bp) protein (340aa)
TRAP dicarboxylate transporter, DctP subunit n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IMG6_METNO
TRAP dicarboxylate transporter subunit DctP
TRAP dicarboxylate transporter, DctP subunit {ECO:0000313|EMBL:ACL58352.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCN18_10_11_15_R4_P_scaffold_535_12
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12461..12724
DNA (264bp) protein (88aa)
transposase IS3 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B797A9
Mobile element protein {ECO:0000313|EMBL:CCW17781.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
SCN18_10_11_15_R4_P_scaffold_535_13
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12751..13572
DNA (822bp) protein (274aa)
integrase n=1 Tax=Methylobacterium sp. 88A RepID=UPI00036EAB3C
Integrase catalytic region {ECO:0000313|EMBL:EHP83041.1}; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
integrase catalytic subunit
SCN18_10_11_15_R4_P_scaffold_535_14
SCNpilot_P_inoc_Rhodobacter_64_50, SCNpilot_P_inoc_Rhodobacter_64_50, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13538..13981
DNA (444bp) protein (148aa)
integrase n=1 Tax=Xanthobacteraceae RepID=UPI0003779DB3
integrase catalytic subunit
Integrase catalytic subunit {ECO:0000313|EMBL:EHK75553.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
SCN18_10_11_15_R4_P_scaffold_535_15
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15066..15722)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Bacillus cereus BAG3O-1 RepID=R8VM91_BACCE
Uncharacterized protein {ECO:0000313|EMBL:EOQ33668.1}; TaxID=1085388 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus BAG3O-1.;"
MarR family transcriptional regulator
SCN18_10_11_15_R4_P_scaffold_535_16
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16153..16557
DNA (405bp) protein (135aa)
2-oxo-hepta-3-ene-1,7-dioic acid hydratase {ECO:0000313|EMBL:EKU51502.1}; EC=4.2.-.- {ECO:0000313|EMBL:EKU51502.1};; TaxID=903918 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.;" source="Acinetobacter sp. WC-323.;"
2-oxo-hepta-3-ene-1,7-dioic acid hydratase n=1 Tax=Acinetobacter baumannii WC-323 RepID=K9B9F1_ACIBA
2-oxo-hepta-3-ene-1,7-dioate hydratase
SCN18_10_11_15_R4_P_scaffold_535_17
Enterobacter cloacae_SCNPILOT_CONT_500_P_Enterobacter_55_6.1, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16702..16995
DNA (294bp) protein (98aa)
2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC:4.1.1.77)
2-oxo-hepta-3-ene-1,7-dioic acid hydratase {ECO:0000313|EMBL:ABV39736.1}; EC=4.1.1.77 {ECO:0000313|EMBL:ABV39736.1};; TaxID=399741 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia proteamaculans (strain 568).;"
2-oxo-hept-3-ene-1,7-dioate hydratase n=1 Tax=Serratia liquefaciens ATCC 27592 RepID=S5ECL2_SERLI
SCN18_10_11_15_R4_P_scaffold_535_18
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17005..17817
DNA (813bp) protein (271aa)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC:4.1.2.20)
4-hydroxy-2-oxovalerate aldolase {ECO:0000313|EMBL:AKH42892.1}; EC=4.1.3.39 {ECO:0000313|EMBL:AKH42892.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VAX1_SPHWW
SCN18_10_11_15_R4_P_scaffold_535_19
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17936..18397
DNA (462bp) protein (154aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7TA06_ALCXX
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EGP42894.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
hypothetical protein
SCN18_10_11_15_R4_P_scaffold_535_20
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18408..19049
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036CAA05
Nitrilotriacetate monooxygenase component B {ECO:0000313|EMBL:EYF05477.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
SCN18_10_11_15_R4_P_scaffold_535_21
CN-SCN_Phenylobacterium_14x, CN-SCN_Phenylobacterium_14x, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19451..19873)
DNA (423bp) protein (141aa)
Integrase catalytic region n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ILR9_XANP2
integrase catalytic subunit
Integrase catalytic region {ECO:0000313|EMBL:ABS68962.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCN18_10_11_15_R4_P_scaffold_535_22
CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, Mobile_element

Not on your lists

comp(20051..20380)
DNA (330bp) protein (110aa)
transposase IS511 n=1 Tax=Rhizobium leguminosarum RepID=UPI0003777E1E
Transposase {ECO:0000313|EMBL:EJK86068.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
hypothetical protein
SCN18_10_11_15_R4_P_scaffold_535_23
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20374..20640)
DNA (267bp) protein (89aa)
Transposase IS3/IS911 family protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IBT6_XANP2
transposase IS3/IS911 family protein
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:ABS65479.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCN18_10_11_15_R4_P_scaffold_535_24
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20656..21189
DNA (534bp) protein (178aa)
integrase n=1 Tax=Hoeflea sp. 108 RepID=UPI000380471A
phage integrase
Phage integrase protein {ECO:0000313|EMBL:ACM35469.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCN18_10_11_15_R4_P_scaffold_535_25
unknown

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comp(21849..22292)
DNA (444bp) protein (148aa)

This feature has no annotations

SCN18_10_11_15_R4_P_scaffold_535_26
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22363..23238
DNA (876bp) protein (292aa)
Integrase family protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ICY0_XANP2
integrase family protein
Integrase family protein {ECO:0000313|EMBL:ABS65873.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCN18_10_11_15_R4_P_scaffold_535_27
unknown

Not on your lists

comp(23176..23295)
DNA (120bp) protein (40aa)

This feature has no annotations

SCN18_10_11_15_R4_P_scaffold_535_28
Paracoccus sp. 361_CN-SCN_Paracoccus_21x, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23429..23713
DNA (285bp) protein (95aa)
transposase n=1 Tax=Xanthobacteraceae RepID=UPI00036AA230
transposase
Transposase {ECO:0000313|EMBL:AIB15606.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
SCN18_10_11_15_R4_P_scaffold_535_29
SCNPILOT_EXPT_1000_BF_Rhodospirillales_43_39, SCNPILOT_EXPT_1000_BF_Rhodospirillales_43_39, SCNPILOT_EXPT_1000_BF_Rhodospirillales_43_39, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23734..24234
DNA (501bp) protein (167aa)
transposase n=1 Tax=Xanthobacteraceae RepID=UPI00037FB8C7
integrase
Integrase {ECO:0000313|EMBL:AIB12670.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
SCN18_10_11_15_R4_P_scaffold_535_30
unknown

Not on your lists

comp(24129..24452)
DNA (324bp) protein (108aa)

This feature has no annotations

Displaying 30 items

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