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SCN18_30_10_14_R3_B_scaffold_1038

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_B_scaffold_1038_1
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..171
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKU8_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30947.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
Binding-protein-dependent transport systems inner membrane component
SCN18_30_10_14_R3_B_scaffold_1038_2
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

261..1274
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NN07_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28920.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
SCN18_30_10_14_R3_B_scaffold_1038_3
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1334..2086
DNA (753bp) protein (251aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
succinate dehydrogenase and fumarate reductase iron-sulfur protein (EC:1.3.99.1)
Succinate dehydrogenase and fumarate reductase iron-sulfur protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9D1_9BRAD
SCN18_30_10_14_R3_B_scaffold_1038_4
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2083..2412
DNA (330bp) protein (110aa)
Succinate dehydrogenase/Fumarate reductase transmembrane subunit n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7XV51_9RHIZ
Succinate dehydrogenase/Fumarate reductase transmembrane subunit {ECO:0000313|EMBL:EMS41508.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1038_5
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2409..2753
DNA (345bp) protein (115aa)
Succinate dehydrogenase, cytochrome b556 subunit n=1 Tax=Afipia felis ATCC 53690 RepID=K8NE72_AFIFE
Succinate dehydrogenase, cytochrome b556 subunit {ECO:0000313|EMBL:EKS28917.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
succinate dehydrogenase cytochrome b subunit
SCN18_30_10_14_R3_B_scaffold_1038_6
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2767..3642
DNA (876bp) protein (292aa)
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit {ECO:0000313|EMBL:EFI50772.1}; EC=4.2.1.2 {ECO:0000313|EMBL:EFI50772.1};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha (EC:4.2.1.2)
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9D4_9BRAD
SCN18_30_10_14_R3_B_scaffold_1038_7
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3654..4262
DNA (609bp) protein (203aa)
Hydrolyase, tartrate beta subunit/fumarate domain-containing protein, Fe-S type n=1 Tax=Afipia felis ATCC 53690 RepID=K8NN02_AFIFE
Hydrolyase, tartrate beta subunit/fumarate domain-containing protein, Fe-S type {ECO:0000313|EMBL:EKS28915.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
Fe-S type hydro-lyase tartrate/fumarate beta region
SCN18_30_10_14_R3_B_scaffold_1038_8
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4268..6025
DNA (1758bp) protein (586aa)
L-aspartate oxidase (EC:1.4.3.16)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKE8_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28914.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCN18_30_10_14_R3_B_scaffold_1038_9
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6219..6548
DNA (330bp) protein (110aa)
SAF domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9D7_9BRAD
(2R)-sulfolactate sulfo-lyase subunit alpha {ECO:0000313|EMBL:CEG08819.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1038_10
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6559..7830
DNA (1272bp) protein (424aa)
Altronate dehydratase {ECO:0000313|EMBL:EFI50776.1}; EC=4.2.1.7 {ECO:0000313|EMBL:EFI50776.1};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
altronate dehydratase (EC:4.2.1.7)
Altronate dehydratase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9D8_9BRAD
SCN18_30_10_14_R3_B_scaffold_1038_11
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7924..8850
DNA (927bp) protein (309aa)
Phosphoglycerate dehydrogenase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NIM4_AFIFE
Phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EKS28911.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase
SCN18_30_10_14_R3_B_scaffold_1038_12
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8847..9833
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NMZ7_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28910.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
malate/L-lactate dehydrogenase
SCN18_30_10_14_R3_B_scaffold_1038_13
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9953..10696
DNA (744bp) protein (248aa)
Transcriptional regulator, GntR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9E1_9BRAD
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EFI50779.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
putative UbiC transcription regulator-associated
SCN18_30_10_14_R3_B_scaffold_1038_14
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10963..12588
DNA (1626bp) protein (542aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P1R2_9BRAD
Glutamate synthase {ECO:0000313|EMBL:KJC47203.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
ferredoxin-dependent glutamate synthase
SCN18_30_10_14_R3_B_scaffold_1038_15
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13174..15261)
DNA (2088bp) protein (696aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNG3_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30671.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
putative carbohydrate-selective porin
SCN18_30_10_14_R3_B_scaffold_1038_16
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15421..16320
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G3G6_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL75303.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCN18_30_10_14_R3_B_scaffold_1038_17
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16434..16709)
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003604FC1
Uncharacterized protein {ECO:0000313|EMBL:EKS37262.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1038_18
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16815..17627)
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NK22_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30672.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
amidohydrolase
SCN18_30_10_14_R3_B_scaffold_1038_19
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17766..18854
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NWR7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33626.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
ABC transporter substrate-binding protein
SCN18_30_10_14_R3_B_scaffold_1038_20
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18874..19659
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003089848
Bradyrhizobium elkanii strain UASWS1015 Contig181, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46894.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
ABC transporter
SCN18_30_10_14_R3_B_scaffold_1038_21
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19768..21396
DNA (1629bp) protein (543aa)
acetolactate synthase n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003454D38
thiamine pyrophosphate binding domain-containing protein
Thiamine pyrophosphate protein TPP binding domain protein {ECO:0000313|EMBL:ACB27920.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
SCN18_30_10_14_R3_B_scaffold_1038_22
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21424..22425
DNA (1002bp) protein (334aa)
Nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y2X3_9RHIZ
Nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein {ECO:0000313|EMBL:EMS41502.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
SCN18_30_10_14_R3_B_scaffold_1038_23
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22702..23496
DNA (795bp) protein (265aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR29_NITHX
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABE61318.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_30_10_14_R3_B_scaffold_1038_24
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23518..24501
DNA (984bp) protein (328aa)
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EGP09796.1}; EC=1.1.1.95 {ECO:0000313|EMBL:EGP09796.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
dihydrofolate reductase n=1 Tax=Afipia birgiae RepID=UPI0002FE8F0D
D-isomer specific 2-hydroxyacid dehydrogenase
SCN18_30_10_14_R3_B_scaffold_1038_25
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24522..25259
DNA (738bp) protein (246aa)
peptidase n=1 Tax=Afipia birgiae RepID=UPI0002DB2E4B
Uncharacterized protein {ECO:0000313|EMBL:EKS33622.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1038_26
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25697..26416)
DNA (720bp) protein (240aa)
DNA repair protein RadC n=2 Tax=Afipia RepID=K8NWU8_AFIFE
DNA repair protein RadC {ECO:0000313|EMBL:EKS30678.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
radC; DNA repair protein RadC
SCN18_30_10_14_R3_B_scaffold_1038_27
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26522..27145)
DNA (624bp) protein (208aa)
map; methionine aminopeptidase Map (EC:3.4.11.18)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
methionine aminopeptidase n=1 Tax=Afipia birgiae RepID=UPI0003088F6C
Displaying 27 items

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