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SCN18_30_10_14_R3_B_scaffold_1584

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_B_scaffold_1584_1
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..423)
DNA (423bp) protein (141aa)
ABC transporter related protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9C8_9BRAD
ABC transporter related protein {ECO:0000313|EMBL:EFI50766.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
ABC transporter
SCN18_30_10_14_R3_B_scaffold_1584_2
unknown

Not on your lists

1281..1550
DNA (270bp) protein (90aa)

This feature has no annotations

SCN18_30_10_14_R3_B_scaffold_1584_3
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1811..2938
DNA (1128bp) protein (376aa)
Phage integrase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKD6_NITHX
phage integrase
Phage integrase {ECO:0000313|EMBL:ABE63311.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_30_10_14_R3_B_scaffold_1584_4
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3127..3366
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKD7_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63310.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_30_10_14_R3_B_scaffold_1584_5
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3363..5630
DNA (2268bp) protein (756aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKD8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63309.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_30_10_14_R3_B_scaffold_1584_6
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5855..6652
DNA (798bp) protein (266aa)
Putative uncharacterized protein n=1 Tax=Citreicella sp. SE45 RepID=D0D7K3_9RHOB
Putative uncharacterized protein {ECO:0000313|EMBL:EEX15710.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1584_7
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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7044..7637
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J5Q2_POLGS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ70136.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCN18_30_10_14_R3_B_scaffold_1584_8
unknown

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7591..7881
DNA (291bp) protein (97aa)

This feature has no annotations

SCN18_30_10_14_R3_B_scaffold_1584_9
unknown

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8003..8413
DNA (411bp) protein (137aa)

This feature has no annotations

SCN18_30_10_14_R3_B_scaffold_1584_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8568..9314
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKE1_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63306.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_30_10_14_R3_B_scaffold_1584_11
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9318..9572
DNA (255bp) protein (85aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JB24_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07683.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_1584_12
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9592..9939)
DNA (348bp) protein (116aa)
Helix-turn-helix domain-containing protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8A6L7_RHIRD
Helix-turn-helix domain-containing protein {ECO:0000313|EMBL:EMS96599.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
XRE family transcriptional regulator
SCN18_30_10_14_R3_B_scaffold_1584_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10070..10360
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AEF4_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EMS96598.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
SCN18_30_10_14_R3_B_scaffold_1584_14
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10496..10957
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J5Q8_POLGS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ70142.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCN18_30_10_14_R3_B_scaffold_1584_15
SCNpilot_BF_INOC_Bacteroidetes_43_41, SCNpilot_BF_INOC_Bacteroidetes_43_41, SCNpilot_BF_INOC_Bacteroidetes_43_41, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11130..12551
DNA (1422bp) protein (474aa)
cytosine-specific DNA-methyltransferase (EC:2.1.1.37)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=1415161 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus Y262.;"
Cytosine-specific methyltransferase n=4 Tax=Rhodobacter capsulatus RepID=D5ANU2_RHOCB
SCN18_30_10_14_R3_B_scaffold_1584_16
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12541..14094
DNA (1554bp) protein (518aa)
Uncharacterized protein n=1 Tax=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) RepID=D5ANU1_RHOCB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE86446.1}; TaxID=272942 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003).;"
SCN18_30_10_14_R3_B_scaffold_1584_17
SCNPILOT_EXPT_750_BF_Plasmid-possible_56_10, SCNPILOT_EXPT_750_BF_Plasmid-possible_56_10, SCNPILOT_EXPT_750_BF_Plasmid-possible_56_10, SCNPILOT_EXPT_750_BF_Plasmid-possible_56_10, SCNPILOT_EXPT_750_BF_Plasmid-possible_56_10, Plasmid-like

Not on your lists

14091..16253
DNA (2163bp) protein (721aa)
Uncharacterized protein n=4 Tax=Rhodobacter capsulatus RepID=D5ANU0_RHOCB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE86445.1}; TaxID=272942 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003).;"
SCN18_30_10_14_R3_B_scaffold_1584_18
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16295..16666
DNA (372bp) protein (124aa)
DNA mismatch endonuclease Vsr (EC:3.1.-.-)
DNA mismatch endonuclease Vsr {ECO:0000313|EMBL:AEM40091.1}; EC=3.1.-.- {ECO:0000313|EMBL:AEM40091.1};; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain WSH-001).;"
DNA mismatch endonuclease Vsr n=1 Tax=Ketogulonicigenium vulgare (strain WSH-001) RepID=F9Y935_KETVW
SCN18_30_10_14_R3_B_scaffold_1584_trna_1
unknown

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comp(16692..16765)
DNA (74bp)
transferRNA Arg
SCN18_30_10_14_R3_B_scaffold_1584_19
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17089..17382)
DNA (294bp) protein (98aa)
C4-dicarboxylate ABC transporter n=1 Tax=Afipia birgiae RepID=UPI00031A1449
C4-dicarboxylate ABC transporter
Uncharacterized protein {ECO:0000313|EMBL:EKS34793.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Displaying 20 items

View Taxonomy