ggKbase home page

SCN18_30_10_14_R3_B_scaffold_1724

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_B_scaffold_1724_1
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..762
DNA (762bp) protein (254aa)
nuoH; NADH-quinone oxidoreductase subunit H (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
NADH-quinone oxidoreductase subunit H n=1 Tax=Afipia felis ATCC 53690 RepID=K8NP69_AFIFE
SCN18_30_10_14_R3_B_scaffold_1724_2
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

770..1258
DNA (489bp) protein (163aa)
NADH-quinone oxidoreductase subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01351};; NADH dehydrogenase I subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; NDH-1 subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
nuoI; NADH dehydrogenase subunit I (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit I n=2 Tax=Bradyrhizobiaceae RepID=F7QMC3_9BRAD
SCN18_30_10_14_R3_B_scaffold_1724_3
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1268..1906
DNA (639bp) protein (213aa)
nuoJ; NADH-quinone oxidoreductase subunit J (EC:1.6.99.5)
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9R0_9BRAD
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 {ECO:0000313|EMBL:EFI50204.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCN18_30_10_14_R3_B_scaffold_1724_4
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1903..2211
DNA (309bp) protein (103aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
NADH-quinone oxidoreductase subunit K n=2 Tax=Bradyrhizobium RepID=G7D7X9_BRAJP
NADH-quinone oxidoreductase subunit K
SCN18_30_10_14_R3_B_scaffold_1724_5
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2219..4300
DNA (2082bp) protein (694aa)
NADH-ubiquinone oxidoreductase chain L {ECO:0000313|EMBL:EGP08129.1}; EC=1.6.5.3 {ECO:0000313|EMBL:EGP08129.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
NADH dehydrogenase subunit L (EC:1.6.99.5)
NADH-ubiquinone oxidoreductase chain L n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QMC6_9BRAD
SCN18_30_10_14_R3_B_scaffold_1724_6
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4297..5805
DNA (1509bp) protein (503aa)
nuoM; NADH dehydrogenase subunit M (EC:1.6.5.3)
Proton-translocating NADH-quinone oxidoreductase, chain M n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PCD2_9BRAD
Proton-translocating NADH-quinone oxidoreductase, chain M {ECO:0000313|EMBL:EKS40277.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCN18_30_10_14_R3_B_scaffold_1724_7
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5828..7261
DNA (1434bp) protein (478aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
nuoN; NADH-quinone oxidoreductase subunit N (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit N n=1 Tax=Afipia broomeae ATCC 49717 PF48_9BRAD">RepID=K8PF48_9BRAD
SCN18_30_10_14_R3_B_scaffold_1724_8
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7263..8048
DNA (786bp) protein (262aa)
birA; biotin--[acetyl-CoA-carboxylase] synthase BirA (EC:6.3.4.15)
Biotin--[acetyl-CoA-carboxylase] synthase BirA {ECO:0000313|EMBL:AEI06791.1}; EC=6.3.4.15 {ECO:0000313|EMBL:AEI06791.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
biotin n=1 Tax=Afipia birgiae RepID=UPI0002FAFA88
SCN18_30_10_14_R3_B_scaffold_1724_9
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8048..9718
DNA (1671bp) protein (557aa)
beta-lactamase n=1 Tax=Afipia birgiae RepID=UPI0002DC196F
Uncharacterized protein {ECO:0000313|EMBL:EKS40280.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
beta-lactamase
SCN18_30_10_14_R3_B_scaffold_1724_10
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9754..10158
DNA (405bp) protein (135aa)
Putative glyoxalase I family protein Methylmalonyl-CoA epimerase {ECO:0000313|EMBL:CCE05921.1}; EC=5.1.99.1 {ECO:0000313|EMBL:CCE05921.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
Putative glyoxalase I family protein Methylmalonyl-CoA epimerase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0THI3_9BRAD
glyoxalase/bleomycin resistance protein/dioxygenase
SCN18_30_10_14_R3_B_scaffold_1724_11
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10162..10434
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P9I7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38191.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1724_12
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10885..11271
DNA (387bp) protein (129aa)
SCN18_30_10_14_R3_B_scaffold_1724_13
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11358..14957
DNA (3600bp) protein (1200aa)
TonB-dependent receptor n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9Q0_9BRAD
TonB-dependent receptor {ECO:0000313|EMBL:EFI50194.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
TonB-dependent receptor
SCN18_30_10_14_R3_B_scaffold_1724_14
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14954..15442
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002E56F7E
Bradyrhizobium elkanii strain UASWS1015 Contig187, whole genome shotgun sequence {ECO:0000313|EMBL:KIU42944.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
putative thiol-disulfide isomerase/thioredoxins-like protein
SCN18_30_10_14_R3_B_scaffold_1724_15
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15557..16876
DNA (1320bp) protein (440aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01570, ECO:0000256|SAAS:SAAS00010700}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01570, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01570}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
proS; proline-tRNA ligase ProS (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PIJ5_9BRAD
SCN18_30_10_14_R3_B_scaffold_1724_16
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16962..18230
DNA (1269bp) protein (423aa)
Lipoprotein-releasing system transmembrane protein LolC n=3 Tax=Oligotropha carboxidovorans RepID=F8BQ73_OLICM
lolC; lipoprotein releasing system transmembrane protein LolC
Lipoprotein-releasing system transmembrane protein LolC {ECO:0000313|EMBL:AEI06781.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_1724_17
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18236..18934
DNA (699bp) protein (233aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
lolD; lipoprotein-releasing system ATP-binding protein LolD (EC:3.6.3.-)
ABC transporter related protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9P4_9BRAD
SCN18_30_10_14_R3_B_scaffold_1724_18
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19057..19464)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9P3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI50187.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1724_19
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19464..19727)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9P2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI50186.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1724_20
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19969..20067
DNA (99bp) protein (33aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q215F3_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD87983.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCN18_30_10_14_R3_B_scaffold_1724_21
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20212..23733
DNA (3522bp) protein (1174aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III, alpha subunit n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKF9_AFIFE
SCN18_30_10_14_R3_B_scaffold_1724_22
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23874..26387
DNA (2514bp) protein (838aa)
Uncharacterized protein n=1 Tax=Oligotropha carboxidovorans (strain OM4) RepID=F8BQ68_OLICM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI06776.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_1724_23
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


26716..27708
DNA (993bp) protein (331aa)
30S ribosomal protein S2 n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PCE7_9BRAD
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
rpsB; 30S ribosomal protein S2
SCN18_30_10_14_R3_B_scaffold_1724_24
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27856..28779
DNA (924bp) protein (308aa)
Elongation factor Ts n=1 Tax=Afipia felis ATCC 53690 RepID=K8NP94_AFIFE
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
tsf; elongation factor Ts
SCN18_30_10_14_R3_B_scaffold_1724_25
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28920..29255
DNA (336bp) protein (112aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
uridylate kinase n=1 Tax=Afipia birgiae RepID=UPI0002E37AA0
pyrH; uridylate kinase
Displaying 25 items

View Taxonomy