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SCN18_30_10_14_R3_B_scaffold_1728

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_B_scaffold_1728_1
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..592)
DNA (591bp) protein (197aa)
anti-sigma factor n=1 Tax=Afipia birgiae RepID=UPI0002D9C19B
Uncharacterized protein {ECO:0000313|EMBL:EGP08552.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
anti-sigma factor
SCN18_30_10_14_R3_B_scaffold_1728_2
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(657..1226)
DNA (570bp) protein (190aa)
RNA polymerase sigma factor n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PKM2_9BRAD
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
sigma-24 (FecI-like)
SCN18_30_10_14_R3_B_scaffold_1728_3
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1367..2188
DNA (822bp) protein (274aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
enoyl-ACP reductase (EC:1.3.1.9)
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Afipia felis ATCC 53690 RepID=K8NRU5_AFIFE
SCN18_30_10_14_R3_B_scaffold_1728_4
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2310..2909
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PP75_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41295.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
phosphoglycerate mutase
SCN18_30_10_14_R3_B_scaffold_1728_5
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3132..4217
DNA (1086bp) protein (362aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
aroC; chorismate synthase AroC (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NXF3_9BRAD
SCN18_30_10_14_R3_B_scaffold_1728_6
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4554..6314
DNA (1761bp) protein (587aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P105_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32118.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
chloride channel protein
SCN18_30_10_14_R3_B_scaffold_1728_7
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6425..7060
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9B6_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CEG08840.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCN18_30_10_14_R3_B_scaffold_1728_8
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7150..8832)
DNA (1683bp) protein (561aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PSI2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41303.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
chemotaxis sensory transducer
SCN18_30_10_14_R3_B_scaffold_1728_9
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9153..9986
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QJ55_RHOPT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACE99936.1}; Flags: Precursor;; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCN18_30_10_14_R3_B_scaffold_1728_10
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10188..11429)
DNA (1242bp) protein (414aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NP31_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32122.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
putative RNA methyltransferase
SCN18_30_10_14_R3_B_scaffold_1728_11
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11550..12281)
DNA (732bp) protein (244aa)
rrmJ; ribosomal RNA large subunit methyltransferase J (EC:2.1.1.-)
hemolysin n=1 Tax=Afipia birgiae RepID=UPI00031374DC
Hemolysin TlyA family protein {ECO:0000313|EMBL:EKS41306.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCN18_30_10_14_R3_B_scaffold_1728_12
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12500..14416)
DNA (1917bp) protein (639aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
dxs1; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=2 Tax=Bradyrhizobiaceae RepID=F7QJV3_9BRAD
SCN18_30_10_14_R3_B_scaffold_1728_13
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14595..14846)
DNA (252bp) protein (84aa)
exodeoxyribonuclease VII small subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 small subunit {ECO:0000255|HAMAP-Rule:MF_00337}; EC=3.1.11.6 {ECO:0000255|HAMAP-Rule:MF_00337};; Exodeoxyribonuclease VII small subunit {ECO:0000255|HAMAP-Rule:MF_00337}; Short=Exonuclease VII small subunit {ECO:0000255|HAMAP-Rule:MF_00337};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Exodeoxyribonuclease 7 small subunit n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=EX7S_NITHX
SCN18_30_10_14_R3_B_scaffold_1728_14
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15011..15817)
DNA (807bp) protein (269aa)
Histone deacetylase family protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JFI2_OLICO
histone deacetylase family protein
Histone deacetylase family protein {ECO:0000313|EMBL:AEI05906.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Displaying 14 items

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