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SCN18_30_10_14_R3_B_scaffold_2134

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_B_scaffold_2134_1
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1700
DNA (1698bp) protein (566aa)
RNA polymerase sigma factor RpoD n=2 Tax=Bradyrhizobiaceae RepID=F7QFT6_9BRAD
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
rpoD2; RNA polymerase sigma factor RpoD
SCN18_30_10_14_R3_B_scaffold_2134_2
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1872..2213)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V302_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07189.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2134_3
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2714..3520
DNA (807bp) protein (269aa)
lytic transglycosylase n=1 Tax=Afipia birgiae RepID=UPI000319ED9D
lytic murein transglycosylase
Lytic murein transglycosylase {ECO:0000313|EMBL:ABD86554.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCN18_30_10_14_R3_B_scaffold_2134_4
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3686..3820)
DNA (135bp) protein (45aa)
Uncharacterized protein {ECO:0000313|EMBL:KGD53187.1}; TaxID=28450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (Pseudomonas pseudomallei).;"
SCN18_30_10_14_R3_B_scaffold_2134_5
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4243..5436
DNA (1194bp) protein (398aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2Z9_9BRAD
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EKS36957.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
diguanylate cyclase
SCN18_30_10_14_R3_B_scaffold_2134_6
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5581..6132
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NPX8_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31186.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2134_7
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6196..6510)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLI7_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31187.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2134_8
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6856..7263)
DNA (408bp) protein (136aa)
msrB2; peptide methionine sulfoxide reductase MsrB (EC:1.8.4.12)
Peptide methionine sulfoxide reductase MsrB {ECO:0000313|EMBL:AEI07512.1}; EC=1.8.4.12 {ECO:0000313|EMBL:AEI07512.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Peptide methionine sulfoxide reductase MsrB n=2 Tax=Oligotropha carboxidovorans RepID=B6JC64_OLICO
SCN18_30_10_14_R3_B_scaffold_2134_9
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7282..8007)
DNA (726bp) protein (242aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
msrA1; peptide methionine sulfoxide reductase MsrA (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA n=2 Tax=Bradyrhizobiaceae RepID=F7QFQ8_9BRAD
SCN18_30_10_14_R3_B_scaffold_2134_10
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8344..8535
DNA (192bp) protein (64aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QJB3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP08638.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2134_11
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8646..9041)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NWD0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32779.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2134_12
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9114..10223)
DNA (1110bp) protein (370aa)
Exodeoxyribonuclease V n=2 Tax=Oligotropha carboxidovorans RepID=B6JC67_OLICO
exodeoxyribonuclease V
Uncharacterized protein {ECO:0000313|EMBL:AEI07509.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_2134_13
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10385..10789
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2Z3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07198.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2134_14
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10827..10985
DNA (159bp) protein (53aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E7B65E
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2134_15
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11060..12328)
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEL9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41097.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Fis family two component transcriptional regulator sigma-54 specific
Displaying 15 items

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