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SCN18_30_10_14_R3_B_scaffold_2135

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_B_scaffold_2135_1
unknown

Not on your lists

2..97
DNA (96bp) protein (32aa)

This feature has no annotations

SCN18_30_10_14_R3_B_scaffold_2135_2
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(130..792)
DNA (663bp) protein (221aa)
Octanoyltransferase {ECO:0000255|HAMAP-Rule:MF_00013}; EC=2.3.1.181 {ECO:0000255|HAMAP-Rule:MF_00013};; Lipoate-protein ligase B {ECO:0000255|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000255|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000255|HAMAP-Rule:MF_00013}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
Octanoyltransferase n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=LIPB_BRADU
lipB; lipoyltransferase
SCN18_30_10_14_R3_B_scaffold_2135_3
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

910..1152
DNA (243bp) protein (81aa)
Surface presentation of antigens n=2 Tax=Oligotropha carboxidovorans RepID=B6JF55_OLICO
Marine sediment metagenome DNA, contig: S03H2_S09403 {ECO:0000313|EMBL:GAH71179.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2135_trna_1
unknown

Not on your lists

1305..1394
DNA (90bp)
transferRNA Leu
SCN18_30_10_14_R3_B_scaffold_2135_4
SCN_Thiomonas_15x, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1597..2871)
DNA (1275bp) protein (425aa)
MFS transporter, ACS family n=2 Tax=Oligotropha carboxidovorans RepID=B6JGI8_OLICO
sodium-dependent phosphate transporter
Sodium-dependent phosphate transporter {ECO:0000313|EMBL:AEI06852.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_2135_5
SCNpilot_P_inoc_Rhodobacter_64_50, SCNpilot_P_inoc_Rhodobacter_64_50, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3075..3614)
DNA (540bp) protein (180aa)
Peptide synthase n=2 Tax=Oligotropha carboxidovorans RepID=B6JGI9_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI06851.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_2135_6
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3782..4363
DNA (582bp) protein (194aa)
Transcriptional regulator, XRE family with cupin sensor n=1 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=B6JGR2_OLICO
XRE family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:AEI06850.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_2135_7
unknown

Not on your lists

comp(4372..4569)
DNA (198bp) protein (66aa)

This feature has no annotations

SCN18_30_10_14_R3_B_scaffold_2135_8
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4648..4824)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NMZ4_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:KJC39328.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCN18_30_10_14_R3_B_scaffold_2135_9
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5040..6134)
DNA (1095bp) protein (365aa)
Polysaccharide deacetylase n=2 Tax=Oligotropha carboxidovorans RepID=B6JF60_OLICO
putative polysaccharide deacetylase
Putative polysaccharide deacetylase {ECO:0000313|EMBL:AEI06962.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_2135_10
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6197..6943)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P8I5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38872.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
putative polysaccharide deacetylase
SCN18_30_10_14_R3_B_scaffold_2135_11
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7172..7516
DNA (345bp) protein (115aa)
Transcriptional regulator, XRE family n=2 Tax=Oligotropha carboxidovorans RepID=B6JF62_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI06960.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_2135_12
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7612..8430
DNA (819bp) protein (273aa)
2,5-didehydrogluconate reductase (EC:1.1.1.274)
Aldo/keto reductase n=1 Tax=Afipia sp. 1NLS2 RepID=D6VA65_9BRAD
Aldo/keto reductase {ECO:0000313|EMBL:EFI50359.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCN18_30_10_14_R3_B_scaffold_2135_13
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8509..9309
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NFU6_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27856.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2135_14
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9323..9601)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NBA2_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27857.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2135_15
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9648..10328)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P730_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38402.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2135_16
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10407..11072
DNA (666bp) protein (222aa)
Glutathione S-transferase domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VA61_9BRAD
Glutathione S-transferase domain protein {ECO:0000313|EMBL:EFI50355.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
glutathione S-transferase
SCN18_30_10_14_R3_B_scaffold_2135_17
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11256..11570
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003750A44
Uncharacterized protein {ECO:0000313|EMBL:EKS38863.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2135_18
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11628..12320
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJ56_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38398.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
Displaying 19 items

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