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SCN18_30_10_14_R3_B_scaffold_2287

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_B_scaffold_2287_1
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..2349
DNA (2349bp) protein (783aa)
ATP-dependent Clp protease ATP-binding subunit ClpA n=2 Tax=Oligotropha carboxidovorans RepID=B6JFT3_OLICO
ATP-dependent Clp protease, ATP-binding protein ClpA {ECO:0000313|EMBL:AEI06944.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
SCN18_30_10_14_R3_B_scaffold_2287_2
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2417..2659)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJY8_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27870.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCN18_30_10_14_R3_B_scaffold_2287_3
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2832..3770
DNA (939bp) protein (313aa)
Putative transglycosylase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QP63_9BRAD
Putative transglycosylase {ECO:0000313|EMBL:EGP07146.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
lytic transglycosylase
SCN18_30_10_14_R3_B_scaffold_2287_4
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3850..4590
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PCC1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38384.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2287_5
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4587..4937
DNA (351bp) protein (117aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q211S6_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD88860.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCN18_30_10_14_R3_B_scaffold_2287_6
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4950..6035)
DNA (1086bp) protein (362aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002F687E1
Uncharacterized protein {ECO:0000313|EMBL:EKS38381.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2287_7
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6072..7307)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKK7_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63240.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_30_10_14_R3_B_scaffold_2287_8
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7406..8179)
DNA (774bp) protein (258aa)
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Afipia sp. 1NLS2 RepID=D6VA46_9BRAD
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:EFI50340.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
glycerophosphoryl diester phosphodiesterase
SCN18_30_10_14_R3_B_scaffold_2287_9
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8183..8650)
DNA (468bp) protein (156aa)
Putative endoribonuclease L-PSP (Protein synthesis inhibitor) n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TG01_9BRAD
Putative endoribonuclease L-PSP (Protein synthesis inhibitor) {ECO:0000313|EMBL:CCE05389.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
endoribonuclease L-PSP
SCN18_30_10_14_R3_B_scaffold_2287_10
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8842..9702
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P707_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38377.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2287_11
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9712..11004)
DNA (1293bp) protein (431aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
DNA polymerase IV (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Afipia felis ATCC 53690 RepID=K8NFW3_AFIFE
SCN18_30_10_14_R3_B_scaffold_2287_12
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11008..11298)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VA42_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07722.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2287_13
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11483..11695
DNA (213bp) protein (71aa)
Response regulator receiver protein n=2 Tax=Afipia RepID=D6VA41_9BRAD
Response regulator receiver protein {ECO:0000313|EMBL:EFI50335.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
divK; polar-differentiation response regulator DivK
SCN18_30_10_14_R3_B_scaffold_2287_14
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11706..13079
DNA (1374bp) protein (458aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJ34_9BRAD
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EKS38373.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
pleD; response regulator PleD
SCN18_30_10_14_R3_B_scaffold_2287_15
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13158..13325)
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=7 Tax=Bradyrhizobiaceae RepID=B6JFU4_OLICO
rpmG; 50S ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCN18_30_10_14_R3_B_scaffold_2287_16
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13527..14330)
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E9B415
Uncharacterized protein {ECO:0000313|EMBL:EKS38831.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2287_17
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14423..15163)
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PH25_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38830.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
nudix hydrolase
SCN18_30_10_14_R3_B_scaffold_2287_18
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15179..15637)
DNA (459bp) protein (153aa)
Zinc-finger protein n=2 Tax=Bradyrhizobiaceae RepID=F7QP45_9BRAD
Zinc-finger protein {ECO:0000313|EMBL:EGP07128.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2287_19
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15667..18006)
DNA (2340bp) protein (780aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
rnr; ribonuclease R (EC:3.1.-.-)
ribonuclease R n=1 Tax=Afipia birgiae RepID=UPI00030AA467
SCN18_30_10_14_R3_B_scaffold_2287_20
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18006..19754)
DNA (1749bp) protein (583aa)
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 {ECO:0000313|EMBL:AEI06928.1}; EC=5.99.1.2 {ECO:0000313|EMBL:AEI06928.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
DNA topoisomerase 1 n=2 Tax=Oligotropha carboxidovorans RepID=B6JFU9_OLICO
Displaying 20 items

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