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SCN18_26_2_15_R1_B_scaffold_1170

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R1_B_scaffold_1170_1
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..542)
DNA (540bp) protein (180aa)
Ribose ABC transport system, permease protein RbsC n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2Z8J4_9RHOB
Monosaccharide ABC transporter membrane protein, CUT2 family {ECO:0000313|EMBL:CDX14976.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
branched-chain amino acid transport system / permease component family protein
SCN18_26_2_15_R1_B_scaffold_1170_2
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(545..1537)
DNA (993bp) protein (331aa)
Ribose ABC transport system, permease protein RbsC n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2YPP9_9RHOB
Ribose ABC transport system, permease protein RbsC {ECO:0000313|EMBL:GAD57356.1}; TaxID=1337093 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella cinnabarina LL-001.;"
sugar ABC transporter permease
SCN18_26_2_15_R1_B_scaffold_1170_3
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1534..3102)
DNA (1569bp) protein (523aa)
Ribose ABC transport system, ATP-binding protein RbsA n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2Z7F7_9RHOB
Ribose ABC transport system, ATP-binding protein RbsA {ECO:0000313|EMBL:GAD57355.1}; TaxID=1337093 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella cinnabarina LL-001.;"
ABC transporter family protein
SCN18_26_2_15_R1_B_scaffold_1170_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3484..4239
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YAQ2_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH88812.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCN18_26_2_15_R1_B_scaffold_1170_5
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4608..4736
DNA (129bp) protein (43aa)
SCN18_26_2_15_R1_B_scaffold_1170_6
unknown

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4747..4836
DNA (90bp) protein (30aa)
SCN18_26_2_15_R1_B_scaffold_1170_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4839..6542
DNA (1704bp) protein (568aa)
kdpA; potassium-transporting ATPase subunit A (EC:3.6.3.12)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
ATPase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000316F83A
SCN18_26_2_15_R1_B_scaffold_1170_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6556..8598
DNA (2043bp) protein (681aa)
kdpB; potassium-transporting ATPase B subunit (EC:3.6.3.12)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
potassium-transporting ATPase subunit B n=1 Tax=Rhizobium giardinii RepID=UPI00035E5C59
SCN18_26_2_15_R1_B_scaffold_1170_9
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8610..9179
DNA (570bp) protein (190aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
potassium-transporting ATPase subunit C (EC:3.6.3.12)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D7D1AA
SCN18_26_2_15_R1_B_scaffold_1170_10
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9214..11910
DNA (2697bp) protein (899aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Osmosensitive K+ channel signal transduction histidine kinase (Two-component system with KdpE) n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AUY1_AZOBR
kdpD; osmosensitive K+ channel signal transduction histidine kinase (two-component system with KdpE)
SCN18_26_2_15_R1_B_scaffold_1170_11
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11907..12596
DNA (690bp) protein (230aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E37C29
kdpE; two-component response regulator of potassium translocation
Two-component response regulator of potassium translocation {ECO:0000313|EMBL:CBS89642.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCN18_26_2_15_R1_B_scaffold_1170_12
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12698..14035)
DNA (1338bp) protein (446aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
Sensor histidine kinase n=2 Tax=Oligotropha carboxidovorans RepID=B6JDT0_OLICO
sensor histidine kinase
SCN18_26_2_15_R1_B_scaffold_1170_13
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14032..14694)
DNA (663bp) protein (221aa)
DNA-binding response regulator n=2 Tax=Oligotropha carboxidovorans RepID=B6JDT1_OLICO
Transcriptional regulator {ECO:0000313|EMBL:EZQ14952.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
qseB; transcriptional regulatory protein QseB
SCN18_26_2_15_R1_B_scaffold_1170_14
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14836..15234
DNA (399bp) protein (133aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BPR5_OLICM
Uncharacterized protein {ECO:0000313|EMBL:EZQ13284.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_1170_15
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15286..15801
DNA (516bp) protein (172aa)
Cytochrome b561 family protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JDT3_OLICO
Cytochrome B561 {ECO:0000313|EMBL:EZQ14954.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
cytochrome b561 family protein
SCN18_26_2_15_R1_B_scaffold_1170_16
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16448..16621
DNA (174bp) protein (58aa)
Uncharacterized protein n=2 Tax=Ochrobactrum RepID=U1YZK3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX21481.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_1170_17
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16633..17697
DNA (1065bp) protein (355aa)
DNA topoisomerase (EC:5.99.1.2)
UPI0003CF3EFD related cluster n=1 Tax=unknown RepID=UPI0003CF3EFD
DNA topoisomerase {ECO:0000313|EMBL:ESX49008.1}; TaxID=1287298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC426A00.;"
SCN18_26_2_15_R1_B_scaffold_1170_18
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17942..18124
DNA (183bp) protein (61aa)
Uncharacterized protein {ECO:0000313|EMBL:CDX22487.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
SCN18_26_2_15_R1_B_scaffold_1170_19
unknown

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18272..18445
DNA (174bp) protein (58aa)

This feature has no annotations

SCN18_26_2_15_R1_B_scaffold_1170_20
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18610..21060)
DNA (2451bp) protein (817aa)
Membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y7F8_MESOW
Membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family {ECO:0000313|EMBL:AEH90831.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
SCN18_26_2_15_R1_B_scaffold_1170_21
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21252..21908
DNA (657bp) protein (219aa)
Cytochrome C n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FIA2_9RHIZ
Cytochrome C {ECO:0000313|EMBL:ESX70611.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
chaperone protein HtpG
SCN18_26_2_15_R1_B_scaffold_1170_22
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21892..24846
DNA (2955bp) protein (985aa)
UPI0003CEB8A6 related cluster n=1 Tax=unknown RepID=UPI0003CEB8A6
Molybdopterin oxidoreductase {ECO:0000313|EMBL:ESW85178.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
SCN18_26_2_15_R1_B_scaffold_1170_23
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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24839..26206
DNA (1368bp) protein (456aa)
UPI0003CE66ED related cluster n=1 Tax=unknown RepID=UPI0003CE66ED
Polysulphide reductase NrfD {ECO:0000313|EMBL:CDX32295.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
polysulfide reductase NrfD
SCN18_26_2_15_R1_B_scaffold_1170_24
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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26203..26730
DNA (528bp) protein (176aa)
Transmembrane prediction n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y6E1_MESOW
Transmembrane prediction {ECO:0000313|EMBL:CDX13461.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
transmembrane prediction
SCN18_26_2_15_R1_B_scaffold_1170_25
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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26727..27263
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y6E0_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH90826.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCN18_26_2_15_R1_B_scaffold_1170_26
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27260..28189
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FHV4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX70668.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
Displaying 26 items

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