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SCN18_26_2_15_R1_B_scaffold_2014

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R1_B_scaffold_2014_1
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1272
DNA (1272bp) protein (424aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic {ECO:0000313|EMBL:CDX29273.1}; EC=2.5.1.54 {ECO:0000313|EMBL:CDX29273.1};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FG11_9RHIZ
3-deoxy-7-phosphoheptulonate synthase, class II
SCN18_26_2_15_R1_B_scaffold_2014_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1297..2379)
DNA (1083bp) protein (361aa)
Diguanylate cyclase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y983_9RHIZ
Diguanylate cyclase {ECO:0000313|EMBL:CDX39265.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
diguanylate cyclase
SCN18_26_2_15_R1_B_scaffold_2014_3
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2570..3028)
DNA (459bp) protein (153aa)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00103216};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19)
phosphoribosyl-AMP cyclohydrolase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003780227
SCN18_26_2_15_R1_B_scaffold_2014_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3052..3687)
DNA (636bp) protein (212aa)
GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
PREDICTED: GTP cyclohydrolase 1-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C133CF
SCN18_26_2_15_R1_B_scaffold_2014_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3829..4278
DNA (450bp) protein (150aa)
Nitrogen-fixing protein NifU n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7H4E1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX24523.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
nitrogen-fixing NifU domain-containing protein
SCN18_26_2_15_R1_B_scaffold_2014_6
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4280..4573
DNA (294bp) protein (98aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HWF9_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK55002.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
DNA polymerase beta domain-containing protein
SCN18_26_2_15_R1_B_scaffold_2014_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4570..4953
DNA (384bp) protein (128aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HWF8_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK55001.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_2014_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4993..6042)
DNA (1050bp) protein (350aa)
alkanal monooxygenase (EC:1.14.14.3)
luciferase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000310BEDD
Luciferase {ECO:0000313|EMBL:EZQ12791.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCN18_26_2_15_R1_B_scaffold_2014_9
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6249..6629
DNA (381bp) protein (127aa)
membrane protein n=1 Tax=Rhizobium loti RepID=UPI00000C846F
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_2014_10
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7242..10433
DNA (3192bp) protein (1064aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
Threonine--tRNA ligase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HWF6_9RHIZ
threonyl-tRNA synthetase
SCN18_26_2_15_R1_B_scaffold_2014_11
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10373..10957
DNA (585bp) protein (195aa)
Nitroreductase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HVM5_9RHIZ
Nitroreductase {ECO:0000313|EMBL:EHK55242.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
nitroreductase
SCN18_26_2_15_R1_B_scaffold_2014_12
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11116..11295
DNA (180bp) protein (60aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HW57_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK55061.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_2014_13
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11485..12135
DNA (651bp) protein (217aa)
cell envelope biogenesis protein OmpA n=1 Tax=Hoeflea sp. 108 RepID=UPI00036EB901
OmpA/MotB domain-containing protein {ECO:0000313|EMBL:EHK54940.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_2014_14
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12213..13130)
DNA (918bp) protein (306aa)
Pseudouridine-5'-phosphate glycosidase {ECO:0000256|HAMAP-Rule:MF_01876}; Short=PsiMP glycosidase {ECO:0000256|HAMAP-Rule:MF_01876};; EC=4.2.1.70 {ECO:0000256|HAMAP-Rule:MF_01876};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
pseudouridine-5''''-phosphate glycosidase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003660FA5
indigoidine synthase A family protein
SCN18_26_2_15_R1_B_scaffold_2014_15
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13155..14114)
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000367194B
Carbohydrate kinase {ECO:0000313|EMBL:ESZ11171.1}; TaxID=1287117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C085B000.;"
PfkB domain-containing protein
SCN18_26_2_15_R1_B_scaffold_2014_16
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14193..15371
DNA (1179bp) protein (393aa)
UPI0003CF0543 related cluster n=1 Tax=unknown RepID=UPI0003CF0543
Uncharacterized protein {ECO:0000313|EMBL:CDX27389.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
Displaying 16 items

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