ggKbase home page

SCN18_30_10_14_R2_B_scaffold_1187

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_1187_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..340)
DNA (339bp) protein (113aa)
glutamine--scyllo-inositol transaminase (EC:2.6.1.50)
Putative PLP-dependent enzyme possibly involved in cell wall biogenesis n=1 Tax=Methylomicrobium album BG8 RepID=H8GLY6_METAL
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase {ECO:0000313|EMBL:GAN00575.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
SCN18_30_10_14_R2_B_scaffold_1187_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(337..1308)
DNA (972bp) protein (324aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SZ43_9BRAD
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:CCD99470.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
NAD-dependent epimerase/dehydratase
SCN18_30_10_14_R2_B_scaffold_1187_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1328..2464)
DNA (1137bp) protein (379aa)
glutamine--scyllo-inositol transaminase (EC:2.6.1.50)
Pleiotropic regulatory protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SZ44_9BRAD
Pleiotropic regulatory protein {ECO:0000313|EMBL:CCD99471.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
SCN18_30_10_14_R2_B_scaffold_1187_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2461..3489)
DNA (1029bp) protein (343aa)
Oxidoreductase domain-containing protein n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5BGK8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KCZ58322.1}; TaxID=1280947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas chukchiensis.;"
oxidoreductase domain-containing protein
SCN18_30_10_14_R2_B_scaffold_1187_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4082..4843
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X011_OCHA4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS14565.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCN18_30_10_14_R2_B_scaffold_1187_trna_1
unknown

Not on your lists

comp(5075..5161)
DNA (87bp)
transferRNA Ser
SCN18_30_10_14_R2_B_scaffold_1187_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5293..5754
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XT25_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:CDN95659.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1187_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5762..6085)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AIP3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD61542.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
lipid A biosynthesis protein
SCN18_30_10_14_R2_B_scaffold_1187_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6087..6800)
DNA (714bp) protein (238aa)
Glycosyl transferase family protein n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8GZT3_CAUCN
glycosyl transferase
Glycosyl transferase family protein {ECO:0000313|EMBL:AAK22456.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCN18_30_10_14_R2_B_scaffold_1187_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6909..8732
DNA (1824bp) protein (608aa)
Glycosyl transferase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P7J7_AZOS1
glycosyl transferase
Glycosyl transferase {ECO:0000313|EMBL:BAI76626.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCN18_30_10_14_R2_B_scaffold_1187_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8890..10167
DNA (1278bp) protein (426aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037D203C
lysine 2,3-aminomutase YodO family protein
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCN18_30_10_14_R2_B_scaffold_1187_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10169..11161
DNA (993bp) protein (331aa)
D-alanine--D-alanine ligase id=4879769 bin=GWC2_Syntrophus__56_31 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
D-alanine--D-alanine ligase
Tax=CG_Syntroph_01
SCN18_30_10_14_R2_B_scaffold_1187_12
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11251..12273
DNA (1023bp) protein (341aa)
D-alanine--D-alanine ligase domain-containing protein n=1 Tax=Desulfovibrio desulfuricans (strain G20) RepID=Q30WV9_DESDG
D-alanine--D-alanine ligase
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
SCN18_30_10_14_R2_B_scaffold_1187_13
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12270..12866
DNA (597bp) protein (199aa)
Uncharacterized protein {ECO:0000313|EMBL:AKF04811.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
SCN18_30_10_14_R2_B_scaffold_1187_14
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12847..13842
DNA (996bp) protein (332aa)
serine/threonine dehydratase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B5908C
pyridoxal-5'-phosphate-dependent protein subunit beta
Pyridoxal-5'-phosphate-dependent protein beta subunit {ECO:0000313|EMBL:ADU45778.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCN18_30_10_14_R2_B_scaffold_1187_15
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13904..14350
DNA (447bp) protein (149aa)
SCN18_30_10_14_R2_B_scaffold_1187_16
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14486..15208
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DJK6_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:AHY53422.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1187_17
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15168..16559)
DNA (1392bp) protein (464aa)
transcriptional regulator n=1 Tax=Rhizobium loti RepID=UPI000373F2DD
Bacterial regulatory s, gntR family protein {ECO:0000313|EMBL:AID31205.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
transcriptional regulator
SCN18_30_10_14_R2_B_scaffold_1187_18
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16640..17377
DNA (738bp) protein (246aa)
UPI0003CFC12D related cluster n=1 Tax=unknown RepID=UPI0003CFC12D
Flavin-nucleotide-binding protein {ECO:0000313|EMBL:ESZ22403.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1187_19
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17374..17808)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003722DB0
Two-component system, chemotaxis family, sensor kinase CheA {ECO:0000313|EMBL:ERF82746.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1187_20
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17805..19121)
DNA (1317bp) protein (439aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI0003701045
Uncharacterized protein {ECO:0000313|EMBL:CCE01336.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
nucleoside-diphosphate sugar epimerase
SCN18_30_10_14_R2_B_scaffold_1187_21
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19121..19591)
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00037A9A8C
Membrane protein {ECO:0000313|EMBL:KER37693.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1187_22
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19655..21535)
DNA (1881bp) protein (627aa)
Cold-shock dead-box protein A n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89IS2_BRADU
ATP-dependent RNA helicase {ECO:0000313|EMBL:KFC73806.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
deaD; cold-shock dead-box protein A
SCN18_30_10_14_R2_B_scaffold_1187_23
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21820..22284)
DNA (465bp) protein (155aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
SCN18_30_10_14_R2_B_scaffold_1187_24
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22303..22770)
DNA (468bp) protein (156aa)
hemin transporter n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A53583
Uncharacterized protein {ECO:0000313|EMBL:KGM32797.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
globin
SCN18_30_10_14_R2_B_scaffold_1187_25
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22819..23253
DNA (435bp) protein (145aa)
HTH-type transcriptional repressor NsrR n=1 Tax=Bacillus isronensis B3W22 RepID=K1KZU6_9BACI
Uncharacterized protein {ECO:0000313|EMBL:KKN71005.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
nsrR; putative transcriptional regulator
SCN18_30_10_14_R2_B_scaffold_1187_26
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23309..23641
DNA (333bp) protein (111aa)
SCN18_30_10_14_R2_B_scaffold_1187_27
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23858..24172)
DNA (315bp) protein (105aa)
Translation initiation factor 3 n=2 Tax=Agrobacterium RepID=A9CKH7_AGRT5
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
infC; translation initiation factor 3
Displaying 28 items

View Taxonomy