ggKbase home page

SCN18_30_10_14_R2_B_scaffold_1369

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_1369_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..502
DNA (501bp) protein (167aa)
Glucan 1,4-alpha-glucosidase (EC:3.2.1.3)
glucan 1,4-alpha-glucosidase n=1 Tax=Nevskia ramosa RepID=UPI0003B4718E
Glucan 1,4-alpha-glucosidase {ECO:0000313|EMBL:EIT67992.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
SCN18_30_10_14_R2_B_scaffold_1369_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

696..1439
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2G8Z5_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL26235.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1369_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1491..2075)
DNA (585bp) protein (195aa)
Outer membrane protein/peptidoglycan-associated lipoprotein n=1 Tax=Caulobacter crescentus OR37 RepID=R0CX78_CAUCE
Outer membrane protein/peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:ENZ81101.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
OmpA/MotB domain-containing protein
SCN18_30_10_14_R2_B_scaffold_1369_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2352..2870
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003602B97
Uncharacterized protein {ECO:0000313|EMBL:KCZ61049.1}; TaxID=1280947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas chukchiensis.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1369_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2946..3581
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Desulfovibrio oxyclinae RepID=UPI00036F397E
Putative transmembrane efflux protein
Putative transmembrane efflux protein {ECO:0000313|EMBL:AEA61427.1}; TaxID=999541 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (strain BSR3).;"
SCN18_30_10_14_R2_B_scaffold_1369_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3583..4728)
DNA (1146bp) protein (382aa)
alanine racemase n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI000372DEAA
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ46472.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
alanine racemase domain-containing protein
SCN18_30_10_14_R2_B_scaffold_1369_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4811..6118
DNA (1308bp) protein (436aa)
Amidohydrolase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IP22_KORVE
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:ABF41378.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
SCN18_30_10_14_R2_B_scaffold_1369_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6122..6463)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI000305F4A7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG88724.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
SCN18_30_10_14_R2_B_scaffold_1369_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6531..7463)
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002D4D556
Beta-lactamase {ECO:0000313|EMBL:KJC45150.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
beta-lactamase
SCN18_30_10_14_R2_B_scaffold_1369_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7460..9535)
DNA (2076bp) protein (692aa)
Dipeptidyl-peptidase 7 n=1 Tax=Caulobacter crescentus OR37 RepID=R0EBQ0_CAUCE
Dipeptidyl-peptidase 7 {ECO:0000313|EMBL:ENZ82908.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
peptidase s46
SCN18_30_10_14_R2_B_scaffold_1369_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9668..9784)
DNA (117bp) protein (39aa)
SCN18_30_10_14_R2_B_scaffold_1369_12
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9815..9928)
DNA (114bp) protein (38aa)
SCN18_30_10_14_R2_B_scaffold_1369_13
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10049..10384)
DNA (336bp) protein (112aa)
SCN18_30_10_14_R2_B_scaffold_1369_14
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10509..11192
DNA (684bp) protein (228aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3Z393_DESAF
two component transcriptional regulator, winged helix family
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EGJ50337.1}; TaxID=690850 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio africanus str. Walvis Bay.;"
SCN18_30_10_14_R2_B_scaffold_1369_15
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11189..12460
DNA (1272bp) protein (424aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=690850 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio africanus str. Walvis Bay.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3Z392_DESAF
integral membrane sensor signal transduction histidine kinase
SCN18_30_10_14_R2_B_scaffold_1369_16
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12707..15697
DNA (2991bp) protein (997aa)
Putative amidohydrolase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UN24_PSEUP
putative amidohydrolase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
SCN18_30_10_14_R2_B_scaffold_1369_17
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15791..16621)
DNA (831bp) protein (277aa)
AraC family transcriptional regulator n=1 Tax=Caulobacter sp. JGI 0001013-D04 RepID=UPI00036BA027
AraC-family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AAK24374.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCN18_30_10_14_R2_B_scaffold_1369_18
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16977..19973
DNA (2997bp) protein (999aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HSH4_9SPHN
tonB-dependent Receptor Plug domain protein
TonB-dependent Receptor Plug domain protein {ECO:0000313|EMBL:AJA11754.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
SCN18_30_10_14_R2_B_scaffold_1369_19
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20064..20633
DNA (570bp) protein (190aa)
GPR1/FUN34/yaaH family protein n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0NIM0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KEZ78989.1}; TaxID=1304275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera hydrothermalis C41B8.;"
GPR1/FUN34/yaaH family protein
SCN18_30_10_14_R2_B_scaffold_1369_20
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20656..21189
DNA (534bp) protein (178aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
Acetyl-coenzyme A synthetase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P6A3_9BRAD
acetate--CoA ligase
Displaying 20 items

View Taxonomy