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SCN18_30_10_14_R2_B_scaffold_1665

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_1665_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..185)
DNA (183bp) protein (61aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1231341 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter orientalis 21F-2.;"
DNA-directed RNA polymerase subunit omega n=1 Tax=Acetobacter tropicalis NBRC 101654 RepID=F7VAP2_9PROT
rpoK; DNA-directed RNA polymerase subunit omega
SCN18_30_10_14_R2_B_scaffold_1665_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(320..826)
DNA (507bp) protein (169aa)
7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK (EC:2.7.6.3)
7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SRV3_RHOPH
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCN18_30_10_14_R2_B_scaffold_1665_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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828..1388
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H1J8_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCN18_30_10_14_R2_B_scaffold_1665_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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1409..2050
DNA (642bp) protein (214aa)
uracil-DNA glycosylase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000379C83F
putative uracil-DNA glycosylase
Uncharacterized protein {ECO:0000313|EMBL:BAL09911.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCN18_30_10_14_R2_B_scaffold_1665_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2033..2506)
DNA (474bp) protein (158aa)
SsrA-binding protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P9Y6_9BRAD
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SsrA-binding protein
SCN18_30_10_14_R2_B_scaffold_1665_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2522..3412)
DNA (891bp) protein (297aa)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4QTX2_9RHIZ
dihydrodipicolinate synthase
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCN18_30_10_14_R2_B_scaffold_1665_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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3524..5596
DNA (2073bp) protein (691aa)
Lytic transglycosylase catalytic|GH23 {ECO:0000313|EMBL:CDO61400.1}; EC=4.2.2.- {ECO:0000313|EMBL:CDO61400.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Putative lytic transglycosylase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z654_AZOL4
putative lytic transglycosylase
SCN18_30_10_14_R2_B_scaffold_1665_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5619..5891)
DNA (273bp) protein (91aa)
Sel1 domain protein repeat-containing protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX23_PARL1
Sel1 domain-containing protein {ECO:0000313|EMBL:GAK44179.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Sel1 domain-containing protein
SCN18_30_10_14_R2_B_scaffold_1665_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6137..6880)
DNA (744bp) protein (248aa)
glutathione S-transferase n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A85ACA
glutathione S-transferase domain-containing protein
Glutathione S-transferase domain {ECO:0000313|EMBL:ABS64453.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_30_10_14_R2_B_scaffold_1665_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7137..7244)
DNA (108bp) protein (36aa)
SCN18_30_10_14_R2_B_scaffold_1665_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7463..8968)
DNA (1506bp) protein (502aa)
aspartyl-tRNA(Asn) amidotransferase subunit B (EC:6.3.5.6)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
glutamyl-tRNA amidotransferase subunit B n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003059EF7
SCN18_30_10_14_R2_B_scaffold_1665_12
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8965..10452)
DNA (1488bp) protein (496aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=GATA_PARL1
glutamyl-tRNA(Gln) amidotransferase subunit A
SCN18_30_10_14_R2_B_scaffold_1665_13
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10449..10922)
DNA (474bp) protein (158aa)
UPI0003CF18F6 related cluster n=1 Tax=unknown RepID=UPI0003CF18F6
Acetyl transferase {ECO:0000313|EMBL:ESY72986.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
N-acetyltransferase GCN5
SCN18_30_10_14_R2_B_scaffold_1665_14
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10919..11206)
DNA (288bp) protein (96aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1629710 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. BRH_c22.;"
gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WD50_9CAUL
SCN18_30_10_14_R2_B_scaffold_1665_15
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11321..11794
DNA (474bp) protein (158aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Putative Holliday junction resolvase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBC0_PELHB
putative Holliday junction resolvase
SCN18_30_10_14_R2_B_scaffold_1665_16
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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11791..13074
DNA (1284bp) protein (428aa)
Major facilitator superfamily MFS_1 n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T5L5_CAUSK
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABZ69573.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCN18_30_10_14_R2_B_scaffold_1665_17
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13133..14080
DNA (948bp) protein (316aa)
Aspartate carbamoyltransferase {ECO:0000255|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000255|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000255|HAMAP-Rule:MF_00001}; Short=ATCase {ECO:0000255|HAMAP-Rule:MF_00001};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Aspartate carbamoyltransferase n=2 Tax=Parvibaculum RepID=PYRB_PARL1
aspartate carbamoyltransferase
SCN18_30_10_14_R2_B_scaffold_1665_18
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14077..15396
DNA (1320bp) protein (440aa)
Dihydroorotase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX09_PARL1
multifunctional complex type dihydroorotase
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCN18_30_10_14_R2_B_scaffold_1665_19
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15620..16231
DNA (612bp) protein (204aa)
glycerol-3-phosphate acyltransferase n=1 Tax=Xanthobacteraceae RepID=UPI0003656DCE
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
acyl-phosphate glycerol-3-phosphate acyltransferase
SCN18_30_10_14_R2_B_scaffold_1665_20
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16228..16569
DNA (342bp) protein (114aa)
DNA protecting protein DprA n=1 Tax=Caulobacter sp. AP07 RepID=J2GP17_9CAUL
dprA; DNA processing protein DprA
DNA protecting protein DprA {ECO:0000313|EMBL:EJL24493.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
SCN18_30_10_14_R2_B_scaffold_1665_21
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17339..17629
DNA (291bp) protein (97aa)
Displaying 21 items

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