ggKbase home page

SCN18_26_2_15_R2_B_scaffold_40

Search features with annotation key words

Displaying items 1-30 of 261 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R2_B_scaffold_40_1
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(185..1498)
DNA (1314bp) protein (438aa)
Beta-glucosidase {ECO:0000256|RuleBase:RU361175}; EC=3.2.1.21 {ECO:0000256|RuleBase:RU361175};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Beta-glucosidase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAB5_PELHB
beta-glucosidase
SCN18_26_2_15_R2_B_scaffold_40_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1575..2012)
DNA (438bp) protein (146aa)
GCN5-related N-acetyltransferase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JWP3_STEMA
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:AEM52139.1}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
SCN18_26_2_15_R2_B_scaffold_40_3
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2015..3097)
DNA (1083bp) protein (361aa)
Scaffold protein for (4Fe-4S) cluster assembly ApbC, MRP-like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAB4_PELHB
Scaffold protein for [4Fe-4S] cluster assembly Apb C, MRP-like {ECO:0000313|EMBL:CDP52761.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Scaffold protein for (4Fe-4S) cluster assembly ApbC, MRP-like protein
SCN18_26_2_15_R2_B_scaffold_40_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3104..3757)
DNA (654bp) protein (218aa)
Probable transaldolase {ECO:0000256|HAMAP-Rule:MF_00494}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00494};; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
Probable transaldolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAB3_PELHB
transaldolase
SCN18_26_2_15_R2_B_scaffold_40_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4038..4166)
DNA (129bp) protein (43aa)
SCN18_26_2_15_R2_B_scaffold_40_6
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4163..4396)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IFB5_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS66708.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCN18_26_2_15_R2_B_scaffold_40_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4425..5609)
DNA (1185bp) protein (395aa)
Aspartate aminotransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAB2_PELHB
Aromatic amino acid aminotransferase {ECO:0000313|EMBL:KKC33219.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
aspartate aminotransferase
SCN18_26_2_15_R2_B_scaffold_40_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5739..6911
DNA (1173bp) protein (391aa)
N-acetyl-L,L-diaminopimelate deacetylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAA9_PELHB
Amidohydrolase {ECO:0000313|EMBL:KKB06706.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
N-acetyl-L,L-diaminopimelate deacetylase
SCN18_26_2_15_R2_B_scaffold_40_9
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6908..7204
DNA (297bp) protein (99aa)
SCN18_26_2_15_R2_B_scaffold_40_10
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7368..7676
DNA (309bp) protein (103aa)
SCN18_26_2_15_R2_B_scaffold_40_11
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7854..9509)
DNA (1656bp) protein (552aa)
Maltodextrin glucosidase {ECO:0000313|EMBL:CDP52751.1}; EC=3.2.1.20 {ECO:0000313|EMBL:CDP52751.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Maltodextrin glucosidase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAA4_PELHB
maltodextrin glucosidase
SCN18_26_2_15_R2_B_scaffold_40_12
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10285..10773
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9M0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL28048.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCN18_26_2_15_R2_B_scaffold_40_13
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10773..12065
DNA (1293bp) protein (431aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
Histidinol dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9M1_PELHB
histidinol dehydrogenase
SCN18_26_2_15_R2_B_scaffold_40_14
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12067..13050
DNA (984bp) protein (328aa)
Arsenate reductase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9M2_PELHB
Uncharacterized protein {ECO:0000313|EMBL:CDP53345.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
arsenate reductase
SCN18_26_2_15_R2_B_scaffold_40_15
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13054..13692
DNA (639bp) protein (213aa)
Maf-like protein KKY_404 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA88_PELHB
Maf-like protein JP74_04390 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
septum formation protein Maf
SCN18_26_2_15_R2_B_scaffold_40_16
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13692..13883
DNA (192bp) protein (64aa)
DNA gyrase inhibitor YacG n=4 Tax=Ochrobactrum RepID=C4WH57_9RHIZ
DNA gyrase inhibitor YacG {ECO:0000256|HAMAP-Rule:MF_00649, ECO:0000256|SAAS:SAAS00085446}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
zinc-binding protein
SCN18_26_2_15_R2_B_scaffold_40_trna_1
unknown

Not on your lists

13972..14044
DNA (73bp)
transferRNA Phe
SCN18_26_2_15_R2_B_scaffold_40_17
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14127..15650
DNA (1524bp) protein (508aa)
Putative uncharacterized protein id=2162987 bin=GWB2_Geobacter-like_52_12 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=GWB2_Geobacteraceae_52_12_curated
SCN18_26_2_15_R2_B_scaffold_40_18
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15616..15780)
DNA (165bp) protein (55aa)
SCN18_26_2_15_R2_B_scaffold_40_19
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15938..16465
DNA (528bp) protein (176aa)
Putative membrane protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBQ9_PELHB
Putative membrane protein {ECO:0000313|EMBL:CDP53174.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCN18_26_2_15_R2_B_scaffold_40_20
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16478..17965)
DNA (1488bp) protein (496aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
glycerol kinase (EC:2.7.1.30)
Glycerol kinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ03_9RHIZ
SCN18_26_2_15_R2_B_scaffold_40_21
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17962..19482)
DNA (1521bp) protein (507aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
glpD; glycerol-3-phosphate dehydrogenase (EC:1.1.5.3)
glycerol-3-phosphate dehydrogenase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003703C27
SCN18_26_2_15_R2_B_scaffold_40_22
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19625..20557
DNA (933bp) protein (311aa)
Malonate transporter, putative n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA96_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL27728.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
malonate transporter
SCN18_26_2_15_R2_B_scaffold_40_23
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20571..21335)
DNA (765bp) protein (255aa)
Protein containing transglutaminase-like domain, putative cysteine protease n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA97_PELHB
Transglutaminase-like domain protein {ECO:0000313|EMBL:KFC68410.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
protein containing transglutaminase-like domain cysteine protease
SCN18_26_2_15_R2_B_scaffold_40_24
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21335..22279)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA98_PELHB
A alpha-helical domain with a conserved ER moti {ECO:0000313|EMBL:KKB85998.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCN18_26_2_15_R2_B_scaffold_40_25
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22280..23701)
DNA (1422bp) protein (474aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA99_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB85999.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCN18_26_2_15_R2_B_scaffold_40_26
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23786..26080)
DNA (2295bp) protein (765aa)
Glucan 1,4-alpha-glucosidase n=1 Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BEB0_MEISD
Glucan 1,4-alpha-glucosidase {ECO:0000313|EMBL:KKB76014.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
glucan 1,4-alpha-glucosidase
SCN18_26_2_15_R2_B_scaffold_40_27
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26070..26855)
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI00037CCC35
Glucose 1-dehydrogenase {ECO:0000313|EMBL:EJU13389.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
glucose dehydrogenase
SCN18_26_2_15_R2_B_scaffold_40_28
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27005..27934
DNA (930bp) protein (310aa)
Lactate dehydrogenase-like oxidoreductase n=1 Tax=Rhizobium sp. CF080 RepID=J3AT82_9RHIZ
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:KFC68407.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
glycerate dehydrogenase (GyaR-like protein)
SCN18_26_2_15_R2_B_scaffold_40_29
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27953..29242)
DNA (1290bp) protein (430aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9M6_PELHB
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
Displaying items 1-30 of 261 in total

View Taxonomy