ggKbase home page

SCN18_25_8_15_R2_B_scaffold_3726

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_3726_1
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(102..353)
DNA (252bp) protein (84aa)
spermidine/putrescine ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI00036E571B
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:KFL31573.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC transporter, permease protein
SCN18_25_8_15_R2_B_scaffold_3726_2
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(555..1592)
DNA (1038bp) protein (346aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036DBD16
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFL31574.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
extracellular solute-binding protein
SCN18_25_8_15_R2_B_scaffold_3726_3
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1731..2198)
DNA (468bp) protein (156aa)
DNA-binding transcriptional dual regulator,leucine-binding n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FLG7_9RHIZ
ArsR family transcriptional regulator {ECO:0000313|EMBL:KFL31575.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
proline dehydrogenase
SCN18_25_8_15_R2_B_scaffold_3726_4
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2319..4844
DNA (2526bp) protein (842aa)
Pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:KFL31576.1}; EC=1.2.1.88 {ECO:0000313|EMBL:KFL31576.1};; EC=1.5.5.2 {ECO:0000313|EMBL:KFL31576.1};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Proline dehydrogenase (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC:1.2.1.88 1.5.99.8)
UPI0003D050E7 related cluster n=1 Tax=unknown RepID=UPI0003D050E7
SCN18_25_8_15_R2_B_scaffold_3726_5
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4853..5611
DNA (759bp) protein (253aa)
Pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:KFL31576.1}; EC=1.2.1.88 {ECO:0000313|EMBL:KFL31576.1};; EC=1.5.5.2 {ECO:0000313|EMBL:KFL31576.1};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putA; proline dehydrogenase family protein (EC:1.5.1.12 1.5.99.8)
Bifunctional PutA protein n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3SS60_9RHOB
SCN18_25_8_15_R2_B_scaffold_3726_6
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5675..6409)
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031C7971
ABC transporter {ECO:0000313|EMBL:KFL31578.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative ATP-binding component of ABC transporter
SCN18_25_8_15_R2_B_scaffold_3726_7
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6406..7242)
DNA (837bp) protein (279aa)
ABC transporter n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C0W3_9RHIZ
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB81108.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
dipeptide ABC transporter, ATP-binding protein
SCN18_25_8_15_R2_B_scaffold_3726_8
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7239..8141)
DNA (903bp) protein (301aa)
cytochrome C550 n=1 Tax=Oceanicola sp. S124 RepID=UPI0002558172
D-ala-D-ala transporter subunit {ECO:0000313|EMBL:KFL31580.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
D,D-dipeptide transport system permease protein
SCN18_25_8_15_R2_B_scaffold_3726_9
Paracoccus sp. 361_CN-SCN_Paracoccus_21x, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8141..9214)
DNA (1074bp) protein (358aa)
peptide ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030E209E
Peptide ABC transporter permease {ECO:0000313|EMBL:KFL31581.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Binding-protein-dependent transport systems inner membrane component
SCN18_25_8_15_R2_B_scaffold_3726_10
SCNpilot_P_inoc_Rhodobacter_64_50, SCNpilot_P_inoc_Rhodobacter_64_50, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9344..10015
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00035D953C
XRE family transcriptional regulator {ECO:0000313|EMBL:KFL31582.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
transcriptional regulator, MerR family
SCN18_25_8_15_R2_B_scaffold_3726_11
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10012..11601
DNA (1590bp) protein (530aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Martelella mediterranea RepID=UPI00036C7510
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFL31583.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
peptide ABC transporter substrate-binding protein
SCN18_25_8_15_R2_B_scaffold_3726_12
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11838..12884
DNA (1047bp) protein (349aa)
Peptidase M24 n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N795_9RHIZ
Peptidase M24 {ECO:0000313|EMBL:KFL31584.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
peptidase M24
Displaying 12 items

View Taxonomy