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SCN18_25_8_15_R2_B_scaffold_1390

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1390_1
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..545
DNA (543bp) protein (181aa)
Lipopolysaccharide biosynthesis n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6I6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL31664.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
lipopolysaccharide biosynthesis protein
SCN18_25_8_15_R2_B_scaffold_1390_2
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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590..1624
DNA (1035bp) protein (345aa)
Polysaccharide deacetylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6I7_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL31665.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
polysaccharide deacetylase
SCN18_25_8_15_R2_B_scaffold_1390_3
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1652..1873)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EW84_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB81310.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
conserved exported protein of unknown function
SCN18_25_8_15_R2_B_scaffold_1390_4
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1942..3003
DNA (1062bp) protein (354aa)
Heme A synthase {ECO:0000256|HAMAP-Rule:MF_01665}; Short=HAS {ECO:0000256|HAMAP-Rule:MF_01665};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_01665};; Cytochrome aa3-controlling protein {ECO:0000256|HAMAP-Rule:MF_01665}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
Heme A synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6I9_PELHB
heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA
SCN18_25_8_15_R2_B_scaffold_1390_5
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3218..3682
DNA (465bp) protein (155aa)
50S ribosomal protein L13 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6J0_PELHB
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
50S ribosomal protein L13
SCN18_25_8_15_R2_B_scaffold_1390_6
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3684..4166
DNA (483bp) protein (161aa)
30S ribosomal protein S9 n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A40F55
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
30S ribosomal protein S9
SCN18_25_8_15_R2_B_scaffold_1390_7
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4360..5028
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000361A3EA
Uncharacterized protein {ECO:0000313|EMBL:KFL31669.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1390_8
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5198..6571
DNA (1374bp) protein (458aa)
Proton/glutamate symport protein / Sodium/glutamate symport protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R937_PELHB
Sodium:proton antiporter {ECO:0000313|EMBL:KFL31670.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
proton/glutamate symport protein / Sodium/glutamate symport protein
SCN18_25_8_15_R2_B_scaffold_1390_9
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6843..7109
DNA (267bp) protein (89aa)
Transcriptional repressor sdpR n=1 Tax=Azospirillum amazonense Y2 RepID=G1XVH4_9PROT
ArsR family transcriptional regulator {ECO:0000313|EMBL:KFL31671.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_1390_10
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7106..7771
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PC50_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KFL31672.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1390_11
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7825..8217
DNA (393bp) protein (131aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB80987.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCN18_25_8_15_R2_B_scaffold_1390_12
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8201..9523)
DNA (1323bp) protein (441aa)
UDP-glucose:sterol glucosyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6J4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB85150.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
UDP-glucose:sterol glucosyltransferase
SCN18_25_8_15_R2_B_scaffold_1390_13
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9945..11168
DNA (1224bp) protein (408aa)
Aspartate aminotransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6J6_PELHB
Aminotransferase {ECO:0000313|EMBL:KFL31674.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
aspartate aminotransferase
SCN18_25_8_15_R2_B_scaffold_1390_14
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11222..12370
DNA (1149bp) protein (383aa)
23S rRNA methyltransferase n=1 Tax=Arthrobacter sp. 135MFCol5.1 RepID=UPI000367F404
23S rRNA methyltransferase {ECO:0000313|EMBL:KFL31675.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
rumB; 23S rRNA methyluridine methyltransferase
SCN18_25_8_15_R2_B_scaffold_1390_15
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12442..13413
DNA (972bp) protein (324aa)
Iron ABC transporter, substrate binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R654_PELHB
Iron ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB11573.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
iron ABC transporter substrate-binding protein
SCN18_25_8_15_R2_B_scaffold_1390_16
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13441..14424
DNA (984bp) protein (328aa)
Iron ABC transporter, substrate binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8L9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL31676.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
iron ABC transporter substrate-binding protein
SCN18_25_8_15_R2_B_scaffold_1390_17
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14623..16149
DNA (1527bp) protein (509aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
Homoserine dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6J7_PELHB
homoserine dehydrogenase
SCN18_25_8_15_R2_B_scaffold_1390_18
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16187..17173
DNA (987bp) protein (329aa)
glpX; fructose 1,6-bisphosphatase II (EC:3.1.3.11)
Fructose-1,6-bisphosphatase, GlpX type n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RAV5_9RHIZ
Fructose-1,6-bisphosphatase {ECO:0000256|PIRNR:PIRNR004532}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_1390_19
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17285..17842)
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003693E5C
Chloramphenicol phosphotransferase {ECO:0000313|EMBL:KFL31679.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
chloramphenicol phosphotransferase
SCN18_25_8_15_R2_B_scaffold_1390_20
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17938..19734
DNA (1797bp) protein (599aa)
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6K0_PELHB
Single-stranded DNA exonuclease {ECO:0000313|EMBL:KFL31680.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
single-stranded-DNA-specific exonuclease RecJ
SCN18_25_8_15_R2_B_scaffold_1390_21
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20075..21310
DNA (1236bp) protein (412aa)
S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6K1_PELHB
S-adenosyl-L-methionine dependent methyltransferase {ECO:0000313|EMBL:KFC71016.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
S-adenosyl-L-methionine dependent methyltransferase
SCN18_25_8_15_R2_B_scaffold_1390_22
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21476..22429
DNA (954bp) protein (318aa)
Iron-siderophore uptake ABC system substrate-binding component n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6K6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB80977.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1390_23
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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22429..23274
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Actinoalloteichus spitiensis RepID=UPI00035FF003
Iron ABC transporter permease {ECO:0000313|EMBL:KFL31682.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
transport system permease protein
Displaying 23 items

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