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SCN18_25_8_15_R2_B_scaffold_1633

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1633_1
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1235)
DNA (1233bp) protein (411aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Signal transduction histidine kinase CheA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBL5_PELHB
signal transduction histidine kinase CheA
SCN18_25_8_15_R2_B_scaffold_1633_2
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1232..1600)
DNA (369bp) protein (123aa)
Chemotaxis regulator-transmits chemoreceptor signals to flagelllar motor components CheY n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBL4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB77790.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY
SCN18_25_8_15_R2_B_scaffold_1633_3
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1619..1930)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBL3_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL32151.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1633_4
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2549..3607)
DNA (1059bp) protein (353aa)
HTH-type transcriptional regulator AglR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5M4_9RHIZ
LacI family transcriptional regulator {ECO:0000313|EMBL:KFL32152.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
aglR; HTH-type transcriptional regulator AglR
SCN18_25_8_15_R2_B_scaffold_1633_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3944..5044
DNA (1101bp) protein (367aa)
oxidoreductase protein (EC:1.1.1.-)
Oxidoreductase protein n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LB91_AGRSH
Oxidoreductase {ECO:0000313|EMBL:KFL32153.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_1633_6
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5174..5986)
DNA (813bp) protein (271aa)
Hemin import ATP-binding protein HmuV {ECO:0000256|SAAS:SAAS00041307}; EC=3.6.3.- {ECO:0000256|SAAS:SAAS00041330};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC-type hemin transport system, ATPase component n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KN16_MESAW
ABC-type hemin transport system, ATPase component
SCN18_25_8_15_R2_B_scaffold_1633_7
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5991..7112)
DNA (1122bp) protein (374aa)
heme ABC transporter permease n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A3FCB0
Iron ABC transporter {ECO:0000313|EMBL:KFL32253.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
iron-siderophores/B12/hemin ABC transporter permease protein
SCN18_25_8_15_R2_B_scaffold_1633_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7116..7991)
DNA (876bp) protein (292aa)
Hemin ABC transporter, periplasmic hemin-binding protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IZW7_POLGS
Hemin ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFL32252.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hmuT; hemin ABC transporter periplasmic hemin-binding protein
SCN18_25_8_15_R2_B_scaffold_1633_9
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8003..9058)
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003687469
Iron transporter {ECO:0000313|EMBL:KFL32251.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hemin-degrading family protein
SCN18_25_8_15_R2_B_scaffold_1633_10
unknown

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comp(9069..9224)
DNA (156bp) protein (52aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036BD1D8
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1633_11
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9419..11614
DNA (2196bp) protein (732aa)
TonB-denpendent receptor n=1 Tax=Rhizobium mongolense RepID=UPI0003B767F4
Uncharacterized protein {ECO:0000313|EMBL:KFL32250.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
TonB-dependent hemoglobin/transferrin/lactoferrin family receptor protein
SCN18_25_8_15_R2_B_scaffold_1633_12
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11691..12629)
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000363CAA3
Galactose 1-dehydrogenase {ECO:0000313|EMBL:KFL32249.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
L-arabinose 1-dehydrogenase
SCN18_25_8_15_R2_B_scaffold_1633_13
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12714..13010)
DNA (297bp) protein (99aa)
Glyoxalase family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REG8_PELHB
Glyoxalase {ECO:0000313|EMBL:KFL32248.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
glyoxalase family protein
SCN18_25_8_15_R2_B_scaffold_1633_14
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13059..14312)
DNA (1254bp) protein (418aa)
Putative hydroxypyruvate reductase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LQ83_RHITR
Hydroxypyruvate reductase {ECO:0000313|EMBL:KFL32247.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative hydroxypyruvate reductase
SCN18_25_8_15_R2_B_scaffold_1633_15
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14434..15123
DNA (690bp) protein (230aa)
Phosphonate metabolism protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J2Y7_POLGS
Uncharacterized protein {ECO:0000313|EMBL:KFL32246.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
phosphonate metabolism protein
SCN18_25_8_15_R2_B_scaffold_1633_16
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15125..16261
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036F6BC5
Phosphonate metabolism protein PhnM {ECO:0000313|EMBL:KFL32245.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
phnM; hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1633_17
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16258..16824
DNA (567bp) protein (189aa)
Ribose 1,5-bisphosphate phosphokinase PhnN {ECO:0000256|HAMAP-Rule:MF_00836}; EC=2.7.4.23 {ECO:0000256|HAMAP-Rule:MF_00836};; Ribose 1,5-bisphosphokinase {ECO:0000256|HAMAP-Rule:MF_00836}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Ribose 1,5-bisphosphate phosphokinase PhnN n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WHR5_9RHIZ
guanylate kinase
SCN18_25_8_15_R2_B_scaffold_1633_18
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16878..17027
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF73_PELHB
Membrane protein {ECO:0000313|EMBL:KFL32243.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1633_19
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17014..17211
DNA (198bp) protein (66aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL32242.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_1633_20
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17368..17643
DNA (276bp) protein (92aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL32241.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_1633_21
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17697..17912)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBV6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL32240.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1633_22
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18499..19002)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9S0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL32239.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1633_23
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19154..19363
DNA (210bp) protein (70aa)
ABC transporter n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J6J4_9SPHN
ABC transporter {ECO:0000313|EMBL:KFL32238.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
lolD; lipoprotein releasing system ATP-binding ABC transporter
Displaying 23 items

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