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SCN18_25_8_15_R2_B_scaffold_1967

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1967_1
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..192
DNA (192bp) protein (64aa)
Cytosine deaminase {ECO:0000313|EMBL:KKB81124.1}; EC=3.5.4.1 {ECO:0000313|EMBL:KKB81124.1};; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
Cytosine deaminase (EC:3.5.4.1)
Cytosine deaminase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4R5G5_9RHIZ
SCN18_25_8_15_R2_B_scaffold_1967_2
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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226..1458
DNA (1233bp) protein (411aa)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
peptidase T (EC:3.4.11.4)
Peptidase T n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0CG92_RHILT
SCN18_25_8_15_R2_B_scaffold_1967_3
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1624..3288
DNA (1665bp) protein (555aa)
Lipid A export ATP-binding/permease protein MsbA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMY7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL29677.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC transporter-like protein
SCN18_25_8_15_R2_B_scaffold_1967_4
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3300..4316)
DNA (1017bp) protein (339aa)
Transcriptional regulator, AraC family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1X3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB07038.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
transcriptional regulator, AraC family
SCN18_25_8_15_R2_B_scaffold_1967_5
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4616..5482
DNA (867bp) protein (289aa)
Putative epimerase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHH6_9RHIZ
Isomerase {ECO:0000313|EMBL:KFL31552.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
D-tagatose 3-epimerase
SCN18_25_8_15_R2_B_scaffold_1967_6
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5479..6990
DNA (1512bp) protein (504aa)
D-ribose transporter ATP binding protein n=1 Tax=Wenxinia marina RepID=UPI00037311A9
Sugar ABC transporter ATPase {ECO:0000313|EMBL:KFL31551.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ribose/galactose/methyl galactoside import ATP-bindingprotein 2
SCN18_25_8_15_R2_B_scaffold_1967_7
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6987..7970
DNA (984bp) protein (328aa)
ABC transporter permease n=1 Tax=Wenxinia marina RepID=UPI00035E99FA
ABC transporter permease {ECO:0000313|EMBL:KFL31550.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative AraH, Ribose/xylose/arabinose/galactoside ABC-type transport system, permease components AraH
SCN18_25_8_15_R2_B_scaffold_1967_8
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7967..8953
DNA (987bp) protein (329aa)
Putative membrane protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TUP4_9RHOB
ABC transporter permease {ECO:0000313|EMBL:KFL31549.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative ribose ABC transporter
SCN18_25_8_15_R2_B_scaffold_1967_9
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8940..10151
DNA (1212bp) protein (404aa)
Putative ABC transporter, periplasmic solute-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CF39_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFL31548.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
binding protein component precursor of ABC ribose transporter
SCN18_25_8_15_R2_B_scaffold_1967_10
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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10219..10779
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TUP2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KFL31547.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1967_11
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10797..11864)
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Enterobacter sp. MGH 8 RepID=U7CR82_9ENTR
LacI family transcriptional regulator {ECO:0000313|EMBL:KKB79292.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
LacI family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_1967_12
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11849..12613)
DNA (765bp) protein (255aa)
3-oxoacyl-ACP reductase n=1 Tax=Leucothrix mucor RepID=UPI0003B35F50
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KFL31265.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
short-chain dehydrogenase/reductase SDR
SCN18_25_8_15_R2_B_scaffold_1967_13
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12613..13941)
DNA (1329bp) protein (443aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A2Z8_9PROT
SCN18_25_8_15_R2_B_scaffold_1967_14
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14096..14818)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K2V0_AGRVS
Membrane protein {ECO:0000313|EMBL:KFL32900.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1967_15
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14831..15595)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031BA6BA
Uncharacterized protein {ECO:0000313|EMBL:KFL32901.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative transmembrane anti-sigma factor
SCN18_25_8_15_R2_B_scaffold_1967_16
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15595..16113)
DNA (519bp) protein (173aa)
Putative ECF sigma factor n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V9A4_9RHIZ
RNA polymerase sigma factor {ECO:0000313|EMBL:KFL32902.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
RNA polymerase sigma factor
SCN18_25_8_15_R2_B_scaffold_1967_17
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16167..16289)
DNA (123bp) protein (41aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL32903.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Displaying 17 items

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