ggKbase home page

SCN18_25_8_15_R2_B_scaffold_2259

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_2259_1
unknown

Not on your lists

comp(1..96)
DNA (96bp) protein (32aa)
SCN18_25_8_15_R2_B_scaffold_2259_2
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

245..787
DNA (543bp) protein (181aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL29191.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_2259_3
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

870..1508
DNA (639bp) protein (213aa)
Polyketide synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Y3_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL29190.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
polyketide synthase
SCN18_25_8_15_R2_B_scaffold_2259_4
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1563..2375
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Y2_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB77137.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2259_5
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2465..3673
DNA (1209bp) protein (403aa)
Multidrug resistance transporter, Bcr/CflA family n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RHN2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL29189.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
drug resistance transporter
SCN18_25_8_15_R2_B_scaffold_2259_6
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4223..4912
DNA (690bp) protein (230aa)
Hydrolase, alpha/beta domain protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZV88_9PROT
Alpha/beta hydrolase {ECO:0000313|EMBL:KKB77134.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
alpha/beta hydrolase
SCN18_25_8_15_R2_B_scaffold_2259_7
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4922..6010)
DNA (1089bp) protein (363aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Phosphoribosylaminoimidazole carboxylase ATPase subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9X9_PELHB
phosphoribosylaminoimidazole carboxylase ATPase subunit
SCN18_25_8_15_R2_B_scaffold_2259_8
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6015..6506)
DNA (492bp) protein (164aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
purE; Phosphoribosylaminoimidazole carboxylase catalytic subunit (AIR carboxylase) (AIRC) (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Rhizobium sp. CF142 RepID=J2KVW4_9RHIZ
SCN18_25_8_15_R2_B_scaffold_2259_9
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6590..6805)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9X5_PELHB
Small protein containing a coiled-coil domain containing protein {ECO:0000313|EMBL:KFL29184.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2259_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6957..7133
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9X4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB77132.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2259_11
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7319..8803
DNA (1485bp) protein (495aa)
Response regulatory protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Z0_PELHB
Fis family transcriptional regulator {ECO:0000313|EMBL:KFL29183.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
response regulatory protein
SCN18_25_8_15_R2_B_scaffold_2259_12
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9020..10642
DNA (1623bp) protein (541aa)
ABC transporter related protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TAS7_MESCW
Glycosyl transferase family 1 {ECO:0000313|EMBL:KFL29182.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC transporter
SCN18_25_8_15_R2_B_scaffold_2259_13
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10893..11567
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F3675B
Uncharacterized protein {ECO:0000313|EMBL:KFL29181.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
porin
SCN18_25_8_15_R2_B_scaffold_2259_14
SCNpilot_P_inoc_Rhodobacter_64_50, SCNpilot_P_inoc_Rhodobacter_64_50, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11661..12374)
DNA (714bp) protein (238aa)
LrgB-like protein n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J3Y2_9RHOB
Membrane protein {ECO:0000313|EMBL:KKB80916.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
LrgB-like protein
SCN18_25_8_15_R2_B_scaffold_2259_15
SCN_Rubrivivax_15x, SCN_Rubrivivax_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12371..12769)
DNA (399bp) protein (133aa)
LrgA family protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EKN7_METSB
Uncharacterized protein {ECO:0000313|EMBL:KKB80917.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
LrgA family protein
SCN18_25_8_15_R2_B_scaffold_2259_16
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12796..14085)
DNA (1290bp) protein (430aa)
Amidohydrolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBK1_PELHB
Peptidase M38 {ECO:0000313|EMBL:KFL32889.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
amidohydrolase
SCN18_25_8_15_R2_B_scaffold_2259_17
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14204..14890)
DNA (687bp) protein (229aa)
Oligopeptide transport ATP-binding protein OppF n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBK2_PELHB
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFL32890.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
oligopeptide transport ATP-binding protein OppF
Displaying 17 items

View Taxonomy