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SCN18_25_8_15_R2_B_scaffold_2263

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_2263_1
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2..664
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI0003664BBB
ABC transporter permease {ECO:0000313|EMBL:KFL32180.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
N-Acetyl-D-glucosamine ABC transport system
SCN18_25_8_15_R2_B_scaffold_2263_2
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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814..1554
DNA (741bp) protein (247aa)
hypothetical protein, partial n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00035FFCA4
Uncharacterized protein {ECO:0000313|EMBL:KFL32179.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
sugar ABC transporter permease
SCN18_25_8_15_R2_B_scaffold_2263_3
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1595..3298)
DNA (1704bp) protein (568aa)
Choline dehydrogenase-like flavoprotein n=1 Tax=Rhizobium sp. AP16 RepID=J2DDB4_9RHIZ
Sorbosone dehydrogenase {ECO:0000313|EMBL:KFL32178.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
FAD-dependent L-sorbose dehydrogenase
SCN18_25_8_15_R2_B_scaffold_2263_4
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3372..4178)
DNA (807bp) protein (269aa)
Transcriptional regulator n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LT82_DINSH
Uncharacterized protein {ECO:0000313|EMBL:KFL32187.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
AraC family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_2263_5
Dyadobacter fermentans_SCNpilot_P_inoc_Dyadobacter_48_40, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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4512..6479
DNA (1968bp) protein (656aa)
tynA; tyramine oxidase (EC:1.4.3.6)
hypothetical protein, partial n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00036F1CD6
Amine oxidase {ECO:0000256|RuleBase:RU000672}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_2263_6
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6528..7202
DNA (675bp) protein (225aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL32176.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_2263_7
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7249..7635)
DNA (387bp) protein (129aa)
Putative translation initiation inhibitor n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MCW1_9RHIZ
Endoribonuclease L-PSP {ECO:0000313|EMBL:KFL31182.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative enzyme of the alternative pyrimidine degradation pathway
SCN18_25_8_15_R2_B_scaffold_2263_8
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7712..8455)
DNA (744bp) protein (248aa)
Transcriptional regulator, GntR family n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U3L3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL31183.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
transcriptional regulator, GntR family
SCN18_25_8_15_R2_B_scaffold_2263_9
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8524..9690)
DNA (1167bp) protein (389aa)
Aspartate aminotransferase n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1A6_9RHOB
Aspartate aminotransferase {ECO:0000313|EMBL:KFL31184.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
beta-eliminating lyase family protein
SCN18_25_8_15_R2_B_scaffold_2263_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9734..11017)
DNA (1284bp) protein (428aa)
Putative oxidoreductase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U6I4_9RHIZ
Oxidoreductase {ECO:0000313|EMBL:KFL31185.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
oxidoreductase
SCN18_25_8_15_R2_B_scaffold_2263_11
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11020..11571)
DNA (552bp) protein (184aa)
peptide ABC transporter permease n=1 Tax=Martelella mediterranea RepID=UPI000380E260
ABC transporter permease {ECO:0000313|EMBL:KFL31186.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
peptide transport system permease protein
SCN18_25_8_15_R2_B_scaffold_2263_12
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11578..11976)
DNA (399bp) protein (133aa)
Putative peptide transport system permease protein n=1 Tax=Arthrobacter sp. Rue61a RepID=J7LZM4_9MICC
ABC transporter permease {ECO:0000313|EMBL:KFL31186.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
peptide transport system permease protein
SCN18_25_8_15_R2_B_scaffold_2263_13
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11973..12911)
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000378A844
ABC transporter permease {ECO:0000313|EMBL:KFL31187.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
appC; oligopeptide transport system permease AppC
SCN18_25_8_15_R2_B_scaffold_2263_14
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12908..14713)
DNA (1806bp) protein (602aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U8C2_9RHIZ
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB80660.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
ABC transporter ATP-binding protein
Displaying 14 items

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