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SCN18_25_8_15_R2_B_scaffold_2706

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_2706_1
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..573
DNA (573bp) protein (191aa)
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
K(+)-insensitive pyrophosphate-energized proton pump n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6W4_PELHB
pyrophosphate-energized proton pump
SCN18_25_8_15_R2_B_scaffold_2706_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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858..1721
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Ahrensia kielensis RepID=UPI000373B0F2
Toxin Fic {ECO:0000313|EMBL:ESX77127.1}; TaxID=1287287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC414A00.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2706_3
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2148..2699
DNA (552bp) protein (184aa)
Riboflavin biosynthesis protein RibD n=1 Tax=Arthrobacter crystallopoietes BAB-32 RepID=N1V170_9MICC
Deaminase/reductase {ECO:0000313|EMBL:KFL30186.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
riboflavin biosynthesis protein RibD
SCN18_25_8_15_R2_B_scaffold_2706_4
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2824..3207)
DNA (384bp) protein (128aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6X6_PELHB
Glyoxalase {ECO:0000313|EMBL:KFL30187.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCN18_25_8_15_R2_B_scaffold_2706_5
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3204..3599)
DNA (396bp) protein (132aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M7N2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB85313.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCN18_25_8_15_R2_B_scaffold_2706_6
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3645..4244)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6X7_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL30188.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2706_7
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4247..6358)
DNA (2112bp) protein (704aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6X8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB07770.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
SCN18_25_8_15_R2_B_scaffold_2706_8
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6458..7069)
DNA (612bp) protein (204aa)
chloramphenicol phosphotransferase n=1 Tax=Rhizobium loti RepID=UPI00036BEFB0
Uncharacterized protein {ECO:0000313|EMBL:KFL30189.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
chloramphenicol phosphotransferase
SCN18_25_8_15_R2_B_scaffold_2706_9
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7066..8133)
DNA (1068bp) protein (356aa)
Beta-lactamase {ECO:0000256|RuleBase:RU361140}; EC=3.5.2.6 {ECO:0000256|RuleBase:RU361140};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
penicillin-binding protein n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A551F1
penicillin-binding protein AmpH
SCN18_25_8_15_R2_B_scaffold_2706_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8233..9456)
DNA (1224bp) protein (408aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
Argininosuccinate synthase n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JA15_AGRRK
argG2; argininosuccinate synthase
SCN18_25_8_15_R2_B_scaffold_2706_11
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9583..10050
DNA (468bp) protein (156aa)
Transcriptional regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JA14_AGRRK
AsnC family transcriptional regulator {ECO:0000313|EMBL:KKB78868.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_2706_12
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10120..10767
DNA (648bp) protein (216aa)
Lysine exporter protein (LYSE/YGGA) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Y0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL30190.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
lysine exporter protein LysE/YggA
SCN18_25_8_15_R2_B_scaffold_2706_13
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10767..11540
DNA (774bp) protein (258aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Y1_PELHB
protein involved in catabolism of external DNA
Displaying 13 items

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