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SCN18_25_8_15_R2_B_scaffold_84

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Displaying items 1-30 of 240 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_84_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..203)
DNA (201bp) protein (67aa)
succinyl-CoA:3-ketoacid-CoA transferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B43955
3-oxoacid CoA-transferase, A subunit
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
SCN18_25_8_15_R2_B_scaffold_84_2
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(389..829)
DNA (441bp) protein (147aa)
Bacterial Transmembrane Pair family protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A8W1_9PROT
Bacterial Transmembrane Pair family protein {ECO:0000313|EMBL:EHL95318.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
transmembrane pair domain-containing protein
SCN18_25_8_15_R2_B_scaffold_84_3
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

924..1811
DNA (888bp) protein (296aa)
LysR family transcriptional regulator n=1 Tax=Alcanivorax sp. PN-3 RepID=U7HU49_9GAMM
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:KFC72231.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
LysR family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_84_4
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1820..2692)
DNA (873bp) protein (291aa)
Transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLJ2_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:KFC66817.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
helix-turn-helix domain, rpiR family protein
SCN18_25_8_15_R2_B_scaffold_84_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2789..4402
DNA (1614bp) protein (538aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLJ3_9RHIZ
ABC-type dipeptide transport system, periplasmic component {ECO:0000313|EMBL:KFC66816.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
extracellular solute-binding protein
SCN18_25_8_15_R2_B_scaffold_84_6
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4486..5463
DNA (978bp) protein (326aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLJ4_9RHIZ
Putative oligopeptide ABC transporter (Permease protein) {ECO:0000313|EMBL:KFC66815.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Dipeptide transport system permease protein DppB (TC 3.A.1.5.2
SCN18_25_8_15_R2_B_scaffold_84_7
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5460..6368
DNA (909bp) protein (303aa)
peptide ABC transporter permease n=1 Tax=Novispirillum itersonii RepID=UPI0003729E06
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:KFC66814.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
binding-protein-dependent transport permease
SCN18_25_8_15_R2_B_scaffold_84_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6365..7357
DNA (993bp) protein (331aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLJ6_9RHIZ
Oligopeptide/dipeptide ABC transporter, ATP-binding-like protein {ECO:0000313|EMBL:KFC66813.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter ATP-binding protein
SCN18_25_8_15_R2_B_scaffold_84_9
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7354..8373
DNA (1020bp) protein (340aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLJ7_9RHIZ
Oligopeptide/dipeptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KFC66812.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
oligopeptide transport ATP-binding protein
SCN18_25_8_15_R2_B_scaffold_84_10
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8370..9245
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLJ8_9RHIZ
Putative poly(Aspartic acid) hydrolase {ECO:0000313|EMBL:KFC66811.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
alpha/beta hydrolase family protein
SCN18_25_8_15_R2_B_scaffold_84_11
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9299..10423)
DNA (1125bp) protein (375aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YU48_9RHIZ
His/Glu/Gln/Arg/opine family amino ABC transporter permease {ECO:0000313|EMBL:KFC74042.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
aapM; putative amino acid ABC transporter, permease protein
SCN18_25_8_15_R2_B_scaffold_84_12
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10425..11597)
DNA (1173bp) protein (391aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YU49_9RHIZ
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:KFC74041.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
aapQ; putative amino-acid ABC transporter membrane protein
SCN18_25_8_15_R2_B_scaffold_84_13
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11684..12715)
DNA (1032bp) protein (344aa)
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Microvirga sp. WSM3557 RepID=I4YU50_9RHIZ
Lysine-arginine-ornithine-binding periplasmic protein {ECO:0000313|EMBL:KFC74040.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_84_14
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13174..14169
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2J590_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE78171.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_84_15
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14266..15048
DNA (783bp) protein (261aa)
Transcriptional regulator n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P1M6_AZOS1
glpR; transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:BAI74555.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCN18_25_8_15_R2_B_scaffold_84_16
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15171..16160
DNA (990bp) protein (330aa)
Phosphonate ABC transporter substrate-binding protein n=2 Tax=Labrenzia RepID=U7GF29_9RHOB
phosphonate-binding periplasmic protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCN18_25_8_15_R2_B_scaffold_84_17
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16160..17017
DNA (858bp) protein (286aa)
Phosphonate ABC transporter, ATP-binding protein id=4546810 bin=GWC2_Syntrophus__56_31 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
phosphonate ABC transporter ATPase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCN18_25_8_15_R2_B_scaffold_84_18
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17014..17820
DNA (807bp) protein (269aa)
Phosphonate uptake transporter id=4546812 bin=GWC2_Syntrophus__56_31 species=Marinobacter algicola genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
ABC transporter permease
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCN18_25_8_15_R2_B_scaffold_84_19
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17817..18647
DNA (831bp) protein (277aa)
Phosphonate ABC transporter permease id=4546813 bin=GWC2_Syntrophus__56_31 species=unknown genus=Nitratireductor taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
phnD2; phosphonates ABC transporter permease protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCN18_25_8_15_R2_B_scaffold_84_20
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18625..19530
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JTE2_9PROT
putative sugar phosphatase (HAD superfamily)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCN18_25_8_15_R2_B_scaffold_84_21
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19836..20222)
DNA (387bp) protein (129aa)
Endoribonuclease L-PSP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D8H3_9RHIZ
Endoribonuclease L-PSP {ECO:0000313|EMBL:EYR84455.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_84_22
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20424..21767
DNA (1344bp) protein (448aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Oxygen-independent coproporphyrinogen-III oxidase n=2 Tax=Bradyrhizobium RepID=HEMN_BRADU
hemN; coproporphyrinogen III oxidase
SCN18_25_8_15_R2_B_scaffold_84_23
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21857..22117)
DNA (261bp) protein (87aa)
SCN18_25_8_15_R2_B_scaffold_84_24
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22122..22673)
DNA (552bp) protein (184aa)
NorE protein involved in nitric oxide reduction {ECO:0000313|EMBL:CCF21363.1}; EC=1.7.2.5 {ECO:0000313|EMBL:CCF21363.1};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
NorE protein involved in nitric oxide reduction n=1 Tax=Rhizobium sp. RepID=L0NJU0_RHISP
norE; cytochrome c oxidase subunit III
SCN18_25_8_15_R2_B_scaffold_84_25
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22670..23557)
DNA (888bp) protein (296aa)
Nitrate reductase n=3 Tax=Ochrobactrum RepID=U1XNT0_9RHIZ
Nitrate reductase {ECO:0000313|EMBL:KDP75689.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_84_26
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23619..24764)
DNA (1146bp) protein (382aa)
Copper-containing nitrite reductase; EC=1.7.2.1;; Cu-NIR; Flags: Precursor;; TaxID=511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis.;"
Nitrite reductase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1X5U2_9RHIZ
nitrite reductase
SCN18_25_8_15_R2_B_scaffold_84_27
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24878..25162)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZX0_9RHIZ
Putative metal-sulfur cluster biosynthetic protein {ECO:0000313|EMBL:EYR78638.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_84_28
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25159..25701)
DNA (543bp) protein (181aa)
Uncharacterized protein n=7 Tax=Rhizobium meliloti RepID=F6BYW5_SINMB
Universal stress protein {ECO:0000313|EMBL:KDP75693.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
putative universal stress protein
SCN18_25_8_15_R2_B_scaffold_84_29
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25664..27061)
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4A5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78636.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transmembrane protein
SCN18_25_8_15_R2_B_scaffold_84_30
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27089..27397)
DNA (309bp) protein (103aa)
Uncharacterized protein n=16 Tax=Brucella ovis RepID=N7PC90_BRUOV
Aminotransferase {ECO:0000313|EMBL:KDP75695.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
Displaying items 1-30 of 240 in total

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