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SCN18_30_10_14_R5_P_scaffold_1005

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R5_P_scaffold_1005_1
SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, Plasmid-like

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comp(176..1123)
DNA (948bp) protein (316aa)
periplasmic solute binding protein; K02077 zinc/manganese transport system substrate-binding protein id=5079899 bin=GWF1_Burkholderiales_GWF1_66_17 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
ABC-type metal ion transport system, periplasmic component/surface adhesin
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCN18_30_10_14_R5_P_scaffold_1005_2
SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, Plasmid-like

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comp(1130..2002)
DNA (873bp) protein (291aa)
ABC superfamily ATP binding cassette transporter, membrane protein id=1262460 bin=GWE1_Burkholderiales_65_30 species=Lautropia mirabilis genus=Lautropia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
ABC-type Mn2+/Zn2+ transport system, permease components
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCN18_30_10_14_R5_P_scaffold_1005_3
SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, Plasmid-like

Not on your lists

comp(1999..2772)
DNA (774bp) protein (258aa)
mntA1; putative manganese transport system ATP-asa protein (EC:3.6.3.35); K02074 zinc/manganese transport system ATP-binding protein id=5079901 bin=GWF1_Burkholderiales_GWF1_66_17 species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
mntA1; ABC-type Mn/Zn transport system, ATPase component
ABC-type Mn/Zn transport system, ATPase component {ECO:0000313|EMBL:BAO80627.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
SCN18_30_10_14_R5_P_scaffold_1005_4
unknown

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comp(2776..2931)
DNA (156bp) protein (52aa)

This feature has no annotations

SCN18_30_10_14_R5_P_scaffold_1005_5
SCNPILOT_CONT_750_P_Aeromonadales_61_5_9, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2934..4199)
DNA (1266bp) protein (422aa)
nickel transporter n=1 Tax=Ochrobactrum anthropi RepID=UPI000289AB36
High-affinity nickel-transporter {ECO:0000313|EMBL:KFC64628.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
transporter membrane protein
SCN18_30_10_14_R5_P_scaffold_1005_6
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4228..5271)
DNA (1044bp) protein (348aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK00_9BURK
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCN18_30_10_14_R5_P_scaffold_1005_7
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5304..6263)
DNA (960bp) protein (320aa)
Zn-dependent hydrolase, glyoxylase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK01_9BURK
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:EHR70973.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
soxH; SoxH like protein
SCN18_30_10_14_R5_P_scaffold_1005_8
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6260..7174)
DNA (915bp) protein (305aa)
superoxide dismutase n=1 Tax=Variovorax paradoxus RepID=UPI000380A309
manganese and iron superoxide dismutase
Manganese and iron superoxide dismutase {ECO:0000313|EMBL:ACS22347.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCN18_30_10_14_R5_P_scaffold_1005_9
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7185..8528)
DNA (1344bp) protein (448aa)
Chromate transporter, chromate ion transporter family n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJZ8_9BURK
Chromate transporter, chromate ion transporter family {ECO:0000313|EMBL:EHR70970.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
chromate transporter
SCN18_30_10_14_R5_P_scaffold_1005_10
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8525..9466)
DNA (942bp) protein (314aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJZ7_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR70969.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
SCN18_30_10_14_R5_P_scaffold_1005_11
SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, Plasmid-like

Not on your lists

comp(9546..9986)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037300FA
Uncharacterized protein {ECO:0000313|EMBL:EKF58113.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
SCN18_30_10_14_R5_P_scaffold_1005_12
CN-SCN_Lautropia_89x, CN-SCN_Lautropia_89x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9996..11318)
DNA (1323bp) protein (441aa)
H+ Antiporter protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MU65_9BURK
H+ Antiporter protein {ECO:0000313|EMBL:EIK92755.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
putative H+ Antiporter protein
SCN18_30_10_14_R5_P_scaffold_1005_13
SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, Plasmid-like

Not on your lists

comp(11341..11625)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MU64_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK92754.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
SCN18_30_10_14_R5_P_scaffold_1005_14
SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, Plasmid-like

Not on your lists

11739..12080
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MU63_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK92753.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
SCN18_30_10_14_R5_P_scaffold_1005_15
SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, Plasmid-like

Not on your lists

12171..12917
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MU62_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK92752.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
membrane protein
SCN18_30_10_14_R5_P_scaffold_1005_16
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12938..13621
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MU61_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK92751.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
plasmidpTOM9-like protein
SCN18_30_10_14_R5_P_scaffold_1005_17
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13774..14337
DNA (564bp) protein (188aa)
Methyltransferase type 12 n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11JW3_MESSB
ribosomal RNA methyltransferase protein
Ribosomal RNA methyltransferase protein {ECO:0000313|EMBL:AJD39844.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
SCN18_30_10_14_R5_P_scaffold_1005_18
SCNPILOT_EXPT_1000_BF_Thiobacillus_strain2_65_27, SCNPILOT_EXPT_1000_BF_Thiobacillus_strain2_65_27, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14374..14895
DNA (522bp) protein (174aa)
lspAD; prolipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36] id=12550145 bin=BDI species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BDI organism_group=Betaproteobacteria
lipoprotein signal peptidase (EC:3.4.23.36)
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCN18_30_10_14_R5_P_scaffold_1005_19
unknown

Not on your lists

15759..15833
DNA (75bp) protein (25aa)
transposase, partial n=4 Tax=Curvibacter lanceolatus RepID=UPI0003826570
Displaying 19 items

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