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SCN18_10_11_15_R1_B_scaffold_830

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R1_B_scaffold_830_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..80)
DNA (78bp) protein (26aa)
Tnp5 n=6 Tax=Bacteria RepID=B5TTS3_9BACT
hypothetical protein
Transposase {ECO:0000313|EMBL:KAJ32715.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCN18_10_11_15_R1_B_scaffold_830_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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194..1759
DNA (1566bp) protein (522aa)
Recombinase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IPS7_XANP2
Recombinase {ECO:0000313|EMBL:CDN92165.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
recombinase
SCN18_10_11_15_R1_B_scaffold_830_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1759..2667
DNA (909bp) protein (303aa)
ParB domain protein nuclease n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IPS8_XANP2
Plasmid partitioning protein {ECO:0000313|EMBL:CDN92166.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
nuclease
SCN18_10_11_15_R1_B_scaffold_830_4
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2667..3566
DNA (900bp) protein (300aa)
RepB plasmid partition n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IPS9_XANP2
Putative transcriptional regulator {ECO:0000313|EMBL:CDN92167.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
RepB plasmid partition
SCN18_10_11_15_R1_B_scaffold_830_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4026..4250)
DNA (225bp) protein (75aa)
Uncharacterized protein {ECO:0000313|EMBL:CDN92168.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCN18_10_11_15_R1_B_scaffold_830_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4287..4475)
DNA (189bp) protein (63aa)
Uncharacterized protein {ECO:0000313|EMBL:CDN92169.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCN18_10_11_15_R1_B_scaffold_830_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4557..4676)
DNA (120bp) protein (40aa)
SCN18_10_11_15_R1_B_scaffold_830_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5010..5363
DNA (354bp) protein (118aa)
ArsR family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT00_9RHIZ
ArsR family transcriptional regulator {ECO:0000313|EMBL:CDN92170.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
ArsR family transcriptional regulator
SCN18_10_11_15_R1_B_scaffold_830_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5360..5776
DNA (417bp) protein (139aa)
Arsenate reductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CP24_9RHIZ
Arsenate reductase {ECO:0000313|EMBL:EYR83814.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acetyltransferase
SCN18_10_11_15_R1_B_scaffold_830_10
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5815..6342
DNA (528bp) protein (176aa)
Arsenate reductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTW7_9RHIZ
Arsenate reductase {ECO:0000313|EMBL:CDN92172.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
arsC; Putative arsenate reductase ArsC
SCN18_10_11_15_R1_B_scaffold_830_11
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6342..7400
DNA (1059bp) protein (353aa)
Arsenite efflux pump ACR3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNH4_9RHIZ
Sodium bile acid symporter family protein {ECO:0000313|EMBL:CDN92173.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
arsenite efflux pump protein
SCN18_10_11_15_R1_B_scaffold_830_12
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7403..7825
DNA (423bp) protein (141aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Arsenate reductase ArsC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXJ4_9RHIZ
arsenate reductase
SCN18_10_11_15_R1_B_scaffold_830_13
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7785..8528
DNA (744bp) protein (248aa)
Arsenical resistance protein ArsH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EF44_9RHIZ
Arsenical resistance protein ArsH {ECO:0000313|EMBL:CDN92175.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
arsH; arsenical resistance protein
SCN18_10_11_15_R1_B_scaffold_830_14
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8915..9844
DNA (930bp) protein (310aa)
phosphate butyryltransferase (EC:2.3.1.19)
Phosphate acetyltransferase Pta n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D421_9RHIZ
Phosphotransacetylase {ECO:0000313|EMBL:CDN92176.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCN18_10_11_15_R1_B_scaffold_830_15
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9841..10956
DNA (1116bp) protein (372aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
ackA; acetate kinase (EC:2.7.2.1)
Acetate kinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZW7_9RHIZ
SCN18_10_11_15_R1_B_scaffold_830_16
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11066..11791
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035C37C4
Universal stress UspA-like protein {ECO:0000313|EMBL:CDN92178.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCN18_10_11_15_R1_B_scaffold_830_17
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11971..12969
DNA (999bp) protein (333aa)
Uncharacterized protein {ECO:0000313|EMBL:AKE42035.1}; TaxID=35755 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium kutscheri.;"
hypothetical protein
SCN18_10_11_15_R1_B_scaffold_830_18
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12801..13493)
DNA (693bp) protein (231aa)
heavy metal translocating P-type ATPase (EC:3.6.3.3)
Heavy metal translocating P-type ATPase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKY0_AFIFE
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:CDN92180.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCN18_10_11_15_R1_B_scaffold_830_19
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13490..13693)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQI4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82599.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_10_11_15_R1_B_scaffold_830_20
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13789..14340)
DNA (552bp) protein (184aa)
Cytochrome b561 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7P8_9RHIZ
Cytochrome b561 {ECO:0000313|EMBL:CDN92181.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
cytochrome B561
SCN18_10_11_15_R1_B_scaffold_830_21
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14340..14618)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNJ6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDN92182.1}; Flags: Precursor;; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCN18_10_11_15_R1_B_scaffold_830_22
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14748..15080
DNA (333bp) protein (111aa)
Putative membrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXL8_9RHIZ
Propeptide PepSY amd peptidase M4 {ECO:0000313|EMBL:CDN92183.1}; Flags: Precursor;; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
peptidase
SCN18_10_11_15_R1_B_scaffold_830_23
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15080..15739
DNA (660bp) protein (220aa)
Transcriptional regulatory protein QseB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT18_9RHIZ
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:CDN92184.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
two-component response regulator protein
SCN18_10_11_15_R1_B_scaffold_830_24
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15736..17100
DNA (1365bp) protein (455aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Virulence sensor histidine kinase PhoQ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQH8_9RHIZ
putative sensory transduction histidine kinase
SCN18_10_11_15_R1_B_scaffold_830_25
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17221..17769
DNA (549bp) protein (183aa)
Putative membrane protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9NDJ7_RHILT
Putative membrane protein {ECO:0000313|EMBL:CDN92186.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
transmembrane protein
SCN18_10_11_15_R1_B_scaffold_830_26
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18118..18492)
DNA (375bp) protein (125aa)
ATPase central domain-containing protein n=1 Tax=Rhizobium lupini HPC(L) RepID=K5CQ88_RHILU
ATPase central domain-containing protein {ECO:0000313|EMBL:CDN92187.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
ATP-dependent Zn protease
SCN18_10_11_15_R1_B_scaffold_830_27
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18900..19853)
DNA (954bp) protein (318aa)
Thiamine biosynthesis lipoprotein ApbE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5T2_9RHIZ
Thiamine biosynthesis lipoprotein ApbE {ECO:0000313|EMBL:EYR79381.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
thiamine biosynthesis lipoprotein ApbE
Displaying 27 items

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