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SCN18_10_11_15_R1_B_scaffold_237_14

Organism: SCN18_10_11_15_R1_B_SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7_63_17

near complete RP 50 / 55 MC: 3 BSCG 51 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: 10561..11400

Top 3 Functional Annotations

Value Algorithm Source
ABC-type transporter, periplasmic subunit family 3 n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F392_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 73.1
  • Coverage: 279.0
  • Bit_score: 425
  • Evalue 3.40e-116
ABC-type transporter, periplasmic subunit family 3 {ECO:0000313|EMBL:EHS52802.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 73.1
  • Coverage: 279.0
  • Bit_score: 425
  • Evalue 4.80e-116
nocT; nopaline binding protein of ABC transporter similarity KEGG
DB: KEGG
  • Identity: 55.1
  • Coverage: 267.0
  • Bit_score: 301
  • Evalue 2.10e-79

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Taxonomy

SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 → SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 840
ATGATTGGTCTCCAAATGATGACGCACGTCCTTCTCATCATCGCGACTGCCAGTCTGGCTCAGGCAGAGGATGGAAAAGCGATTAAGATCGCGACGGAAGGCGCGTTTCCGCCGTGGAACGCAATTGACACGTCGGGAAAGCCGATCGGCTTCGATATCGACGTCGGCACTGCATTGTGCGAGCGCGCGAAACTGAAGTGCGAGTTCGTCACCCAAGCTTGGGACGGAATTATTCCCGCCCTGAACGTAGGTAAGTATGACGCGATCATGGCCGGCATGTCGATCACCGAAAAGCGAAAGCAGGTAATCGCATTCTCGAATCCCTACGCGCTGACGTCGAACTACTTCGTGGTCAATAAGGCCCTCAGGCTCCCCGTTGTAGACAACGAGGCCCAGCTCGATCTTTCCTCCCAAACCGAGGCGAACAAGCGCGCTCTGCAGACGCTGAAGGAAAACCTCAAGGGGAAGGCAATTGGCGTGCAGGGATCCACGAATGCCGAAGCGTTTATCAGAGAACACTTCGGCGACACGGTCGAAATTCGCACTTATGACAAGCAGGATAATCTCAACATGGATTTGGCCGCTGGCCGGCTCGATGGCGGATTGGCAGACTATTCCGTGTGGAAAGCATTCTTGGAATCGAAATATGGCACTTCGGCGACGTTGTACGGACCCCGCATTTCGGGAGGACTCTTCGGTCCGGGTGTCGGGATCGGATTGCGGAAGGAAGATCGCTGGCTGGCTGACACGTTCAATGATGCTTTAAAGGCAATCACCGACGACGGCAGTCTGAAGCAGATGAGCCTTAAGTGGTTCGGAGCGGATTTGGTTTCGAAGTAG
PROTEIN sequence
Length: 280
MIGLQMMTHVLLIIATASLAQAEDGKAIKIATEGAFPPWNAIDTSGKPIGFDIDVGTALCERAKLKCEFVTQAWDGIIPALNVGKYDAIMAGMSITEKRKQVIAFSNPYALTSNYFVVNKALRLPVVDNEAQLDLSSQTEANKRALQTLKENLKGKAIGVQGSTNAEAFIREHFGDTVEIRTYDKQDNLNMDLAAGRLDGGLADYSVWKAFLESKYGTSATLYGPRISGGLFGPGVGIGLRKEDRWLADTFNDALKAITDDGSLKQMSLKWFGADLVSK*