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SCN18_14_9_16_R4_B_scaffold_1723

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R4_B_scaffold_1723_1
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..786)
DNA (786bp) protein (262aa)
riboflavin biosynthesis protein RibD n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6D88D
riboflavin biosynthesis protein RibD
Riboflavin biosynthesis protein RibD {ECO:0000313|EMBL:AJP74673.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_14_9_16_R4_B_scaffold_1723_2
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(810..1232)
DNA (423bp) protein (141aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WYB2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAM01467.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_1723_3
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1300..1953)
DNA (654bp) protein (218aa)
biopolymer transporter TonB n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CC608
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIT07228.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCN18_14_9_16_R4_B_scaffold_1723_4
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2231..3565)
DNA (1335bp) protein (445aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
glutamyl-tRNA ligase (EC:6.1.1.17)
Glutamate--tRNA ligase n=1 Tax=Sphingomonas sp. S17 RepID=F3WXZ9_9SPHN
SCN18_14_9_16_R4_B_scaffold_1723_5
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3651..4586
DNA (936bp) protein (312aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
ribose-phosphate pyrophosphokinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B363B1
SCN18_14_9_16_R4_B_scaffold_1723_6
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4730..5056)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036910E8
pilus assembly protein PilZ
Pilus assembly protein PilZ {ECO:0000313|EMBL:AIT07225.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCN18_14_9_16_R4_B_scaffold_1723_7
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5170..6744
DNA (1575bp) protein (525aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00177}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00177};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00177}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
lysK; lysine--tRNA ligase (EC:6.1.1.6)
lysyl-tRNA synthetase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037D5183
SCN18_14_9_16_R4_B_scaffold_1723_8
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6741..7943
DNA (1203bp) protein (401aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036F58A9
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
Na(+)/H(+) antiporter NhaA
SCN18_14_9_16_R4_B_scaffold_1723_9
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8036..8710)
DNA (675bp) protein (225aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Sphingomonas sp. S17 RepID=F3X1J9_9SPHN
ribosomal RNA large subunit methyltransferase E
SCN18_14_9_16_R4_B_scaffold_1723_10
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8707..9744)
DNA (1038bp) protein (346aa)
exopolyphosphatase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B513D0
DNA, contig: SP623 {ECO:0000313|EMBL:GAN13715.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
exopolyphosphatase
SCN18_14_9_16_R4_B_scaffold_1723_trna_1
unknown

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9891..9961
DNA (71bp)
transferRNA Gln
SCN18_14_9_16_R4_B_scaffold_1723_11
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10218..10316)
DNA (99bp) protein (33aa)
Displaying 12 items

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