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SCN18_30_10_14_R1_B_scaffold_2031

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2031_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1886)
DNA (1884bp) protein (628aa)
Elongation factor G n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KJG2_9SPHN
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
fusA; elongation factor G
SCN18_30_10_14_R1_B_scaffold_2031_2
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2077..2547)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ70_9SPHN
rpsG; 30S ribosomal protein S7
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2031_3
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2566..2937)
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ71_9SPHN
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2031_4
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3278..3802
DNA (525bp) protein (175aa)
Helix-turn-helix-domain containing protein n=1 Tax=Methylobacterium sp. GXF4 RepID=I9WMI2_9RHIZ
Helix-turn-helix-domain containing protein {ECO:0000313|EMBL:EIZ81518.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
protein of unassigned function
SCN18_30_10_14_R1_B_scaffold_2031_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3952..4698
DNA (747bp) protein (249aa)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000256|HAMAP-Rule:MF_01813}; Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ74_9SPHN
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase UbiE
SCN18_30_10_14_R1_B_scaffold_2031_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4747..6300
DNA (1554bp) protein (518aa)
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Ubiquinone biosynthesis protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ75_9SPHN
ubiB; ubiquinone biosynthesis protein
SCN18_30_10_14_R1_B_scaffold_2031_7
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6390..7076)
DNA (687bp) protein (229aa)
aspartate racemase n=1 Tax=Oceanicola sp. S124 RepID=UPI0002557A91
Aspartate racemase {ECO:0000313|EMBL:KDR44614.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
aspartate racemase
SCN18_30_10_14_R1_B_scaffold_2031_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7122..8312
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD0C5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP72580.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_30_10_14_R1_B_scaffold_2031_9
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8319..9575
DNA (1257bp) protein (419aa)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase {ECO:0000313|EMBL:BAK68250.1}; EC=4.1.1.36 {ECO:0000313|EMBL:BAK68250.1};; EC=6.3.2.5 {ECO:0000313|EMBL:BAK68250.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ76_9SPHN
coaBC; phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase
SCN18_30_10_14_R1_B_scaffold_2031_10
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9788..10237
DNA (450bp) protein (150aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=391589 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. GAI101.;"
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Roseobacter sp. GAI101 RepID=B7RGY0_9RHOB
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
SCN18_30_10_14_R1_B_scaffold_2031_11
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10423..11268)
DNA (846bp) protein (282aa)
MltA-interacting MipA n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MMP7_9SPHN
MltA-interacting MipA {ECO:0000313|EMBL:CCW16743.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
MltA-interacting MipA
SCN18_30_10_14_R1_B_scaffold_2031_12
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11287..11973)
DNA (687bp) protein (229aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
Lipoprotein-releasing system ATP-binding protein lolD 2 n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MMC5_9SPHN
ABC transporter
SCN18_30_10_14_R1_B_scaffold_2031_13
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11970..13175)
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MII1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW16741.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2031_14
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13180..14232)
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MHQ9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW16740.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
secretion protein HlyD
SCN18_30_10_14_R1_B_scaffold_2031_15
SCNpilot_P_inoc_Xanthomonadales_63_13, SCNpilot_P_inoc_Xanthomonadales_63_13, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14503..15798
DNA (1296bp) protein (432aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00037CAFA5
ferric reductase domain-containing protein
Ferric reductase domain-containing protein {ECO:0000313|EMBL:AGH49457.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCN18_30_10_14_R1_B_scaffold_2031_16
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16025..17278)
DNA (1254bp) protein (418aa)
Heavy metal efflux system protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILJ6_9SPHN
heavy metal efflux system protein
Heavy metal efflux system protein {ECO:0000313|EMBL:BAK67589.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2031_17
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17275..17574)
DNA (300bp) protein (100aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=T0ICW7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB07454.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2031_18
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17567..20638)
DNA (3072bp) protein (1024aa)
Cobalt-zinc-cadmium resistance protein CzcA Cation efflux system protein CusA n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MQ62_9SPHN
Cobalt-zinc-cadmium resistance protein CzcA Cation efflux system protein CusA {ECO:0000313|EMBL:CCW19071.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
heavy metal efflux system protein
SCN18_30_10_14_R1_B_scaffold_2031_19
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20647..20829)
DNA (183bp) protein (61aa)
Probable Co/Zn/Cd efflux system membrane fusion protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MTT4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EXS70494.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
heavy metal efflux system protein
SCN18_30_10_14_R1_B_scaffold_2031_20
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20816..21661)
DNA (846bp) protein (282aa)
RND transporter n=2 Tax=Sphingobium RepID=T0GU26_9SPHN
RND transporter {ECO:0000313|EMBL:KER34714.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
heavy metal efflux system protein
SCN18_30_10_14_R1_B_scaffold_2031_21
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21800..22636)
DNA (837bp) protein (279aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
Two-component system sensor histidine kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILK0_9SPHN
two-component system sensor histidine kinase
SCN18_30_10_14_R1_B_scaffold_2031_22
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22633..23310)
DNA (678bp) protein (226aa)
Transcriptional regulator n=2 Tax=Sphingobium RepID=T0H5R3_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:EXS70491.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
two component transcriptional regulator
SCN18_30_10_14_R1_B_scaffold_2031_23
SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, Bacteria

Not on your lists

23840..25390
DNA (1551bp) protein (517aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=120965 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; environmental samples.;" source="uncultured planctomycete.;"
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00030AF84B
PAS domain S-box
Displaying 23 items

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