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SCN18_30_10_14_R1_B_scaffold_5112

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_5112_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1280)
DNA (1278bp) protein (426aa)
Acyl-CoA carboxylase beta chain {ECO:0000313|EMBL:BAK65648.1}; EC=6.4.1.- {ECO:0000313|EMBL:BAK65648.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Acyl-CoA carboxylase beta chain n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP09_9SPHN
acyl-CoA carboxylase subunit beta
SCN18_30_10_14_R1_B_scaffold_5112_2
Sphingopyxis sp. MC1_SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1333..1593)
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP10_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65649.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_5112_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1590..2525)
DNA (936bp) protein (312aa)
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:BAK65650.1}; EC=1.3.99.10 {ECO:0000313|EMBL:BAK65650.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Isovaleryl-CoA dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP11_9SPHN
isovaleryl-CoA dehydrogenase
SCN18_30_10_14_R1_B_scaffold_5112_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2522..2701)
DNA (180bp) protein (60aa)
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:BAK65650.1}; EC=1.3.99.10 {ECO:0000313|EMBL:BAK65650.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Isovaleryl-CoA dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP11_9SPHN
isovaleryl-CoA dehydrogenase
SCN18_30_10_14_R1_B_scaffold_5112_5
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2896..3633
DNA (738bp) protein (246aa)
UPI0003CFACAA related cluster n=1 Tax=unknown RepID=UPI0003CFACAA
short chain dehydrogenase
Short chain dehydrogenase {ECO:0000313|EMBL:BAO30311.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
SCN18_30_10_14_R1_B_scaffold_5112_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3657..4397
DNA (741bp) protein (247aa)
glucose-1-dehydrogenase (EC:1.1.1.47)
Glucose-1-dehydrogenase {ECO:0000313|EMBL:AHF85962.1}; EC=1.1.1.47 {ECO:0000313|EMBL:AHF85962.1};; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
glucose-1-dehydrogenase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037EB676
SCN18_30_10_14_R1_B_scaffold_5112_7
unknown

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4477..4968
DNA (492bp) protein (164aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_5112_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5376..5663
DNA (288bp) protein (96aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP13_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65652.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_5112_9
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5712..6218)
DNA (507bp) protein (169aa)
Tax=RIFCSPLOWO2_12_FULL_Gammaproteobacteria_52_10_curated
SCN18_30_10_14_R1_B_scaffold_5112_10
Sphingopyxis sp. MC1_SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6393..7505
DNA (1113bp) protein (371aa)
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Alcohol dehydrogenase class III n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP15_9SPHN
alcohol dehydrogenase
SCN18_30_10_14_R1_B_scaffold_5112_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7607..7993
DNA (387bp) protein (129aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP17_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65656.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_5112_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7997..8845
DNA (849bp) protein (283aa)
Putative esterase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP18_9SPHN
putative esterase
Putative esterase {ECO:0000313|EMBL:BAK65657.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_5112_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9058..9543
DNA (486bp) protein (162aa)
Conserved hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP20_9SPHN
hypothetical protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAK65659.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_5112_14
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9559..10053
DNA (495bp) protein (165aa)
Conserved hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP21_9SPHN
hypothetical protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAK65660.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_5112_15
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10124..10996
DNA (873bp) protein (291aa)
Putative MarR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP22_9SPHN
putative MarR family transcriptional regulator
Putative MarR family transcriptional regulator {ECO:0000313|EMBL:BAK65661.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 15 items

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