ggKbase home page

SCN18_30_10_14_R1_B_scaffold_5958

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_5958_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..261
DNA (261bp) protein (87aa)
MFS transporter, FHS family, L-fucose permease n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EG64_9SPHN
glucose transporter
MFS transporter, FHS family, L-fucose permease {ECO:0000313|EMBL:EHJ59753.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCN18_30_10_14_R1_B_scaffold_5958_2
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(265..1041)
DNA (777bp) protein (259aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP36_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65675.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_5958_3
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1104..1235
DNA (132bp) protein (44aa)
SCN18_30_10_14_R1_B_scaffold_5958_4
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1460..1858)
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP37_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65676.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_5958_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2208..2618
DNA (411bp) protein (137aa)
CheY-like response regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP38_9SPHN
chemotaxis protein CheY
CheY-like response regulator {ECO:0000313|EMBL:BAK65677.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_5958_6
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2615..2959
DNA (345bp) protein (115aa)
CheY-like response regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP38_9SPHN
chemotaxis protein CheY
CheY-like response regulator {ECO:0000313|EMBL:BAK65677.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_5958_7
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3002..4687)
DNA (1686bp) protein (562aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP39_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65678.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_5958_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4946..5188
DNA (243bp) protein (81aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP41_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65680.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_5958_9
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5175..5759
DNA (585bp) protein (195aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP42_9SPHN
RNA polymerase ECF-type sigma factor
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:BAK65681.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_5958_10
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5799..7379)
DNA (1581bp) protein (527aa)
ATP-dependent DNA ligase (EC:6.5.1.1)
ATP-dependent DNA ligase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0H8A7_9SPHN
ATP-dependent DNA ligase {ECO:0000313|EMBL:EQB12591.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
SCN18_30_10_14_R1_B_scaffold_5958_11
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7346..8323)
DNA (978bp) protein (326aa)
Ribonuclease {ECO:0000313|EMBL:AKH43359.1}; EC=3.1.-.- {ECO:0000313|EMBL:AKH43359.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P9P3_9SPHN
RNA procession exonuclease-like protein
SCN18_30_10_14_R1_B_scaffold_5958_12
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8422..8856
DNA (435bp) protein (145aa)
Putative response regulator receiver protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP43_9SPHN
putative response regulator receiver protein
Putative response regulator receiver protein {ECO:0000313|EMBL:BAK65682.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_5958_13
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8921..9190
DNA (270bp) protein (90aa)
Transglycosylase-associated protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C9R6_9SPHN
transglycosylase
Transglycosylase {ECO:0000313|EMBL:AIT05150.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCN18_30_10_14_R1_B_scaffold_5958_14
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9263..9481)
DNA (219bp) protein (73aa)
Conserved hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP44_9SPHN
hypothetical protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAK65683.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 14 items

View Taxonomy