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SCN18_30_10_14_R1_B_scaffold_1879

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_1879_1
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3..104
DNA (102bp) protein (34aa)
GAF sensor signal transduction histidine kinase (EC:2.7.3.-); K07673 two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] id=12496434 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
GAF sensor signal transduction histidine kinase (EC:2.7.3.-)
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCN18_30_10_14_R1_B_scaffold_1879_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(434..952)
DNA (519bp) protein (173aa)
SCN18_30_10_14_R1_B_scaffold_1879_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1084..2376)
DNA (1293bp) protein (431aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00036D6273
primase 2
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCN18_30_10_14_R1_B_scaffold_1879_4
SCNPILOT_EXPT_750_BF_Nitrosomonadales_56_52, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2463..2699)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FTV5_PHAMO
phage-like protein
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCN18_30_10_14_R1_B_scaffold_1879_5
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2986..4323)
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI00036844FE
phage related integrase
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCN18_30_10_14_R1_B_scaffold_1879_6
Dyadobacter fermentans_SCNpilot_P_inoc_Dyadobacter_48_40, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(4818..5507)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FLF3_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EDM73221.1}; TaxID=351016 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. AzwK-3b.;"
type 11 methyltransferase
SCN18_30_10_14_R1_B_scaffold_1879_7
CN-SCN_Phenylobacterium_14x, CN-SCN_Phenylobacterium_14x, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5843..6190)
DNA (348bp) protein (116aa)
Putative translation initiation inhibitor, yjgF family n=1 Tax=Caulobacter sp. AP07 RepID=J2GWK5_9CAUL
Putative translation initiation inhibitor, yjgF family {ECO:0000313|EMBL:EJL27308.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
endoribonuclease L-PSP
SCN18_30_10_14_R1_B_scaffold_1879_8
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6234..7490)
DNA (1257bp) protein (419aa)
D-amino acid dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01202}; EC=1.4.99.1 {ECO:0000256|HAMAP-Rule:MF_01202, ECO:0000313|EMBL:AJR25907.1};; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
D-amino acid dehydrogenase small subunit n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A45B
D-amino acid dehydrogenase small subunit
SCN18_30_10_14_R1_B_scaffold_1879_9
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7487..8218)
DNA (732bp) protein (244aa)
alanine racemase (EC:5.1.1.1)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
alanine racemase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A45C
SCN18_30_10_14_R1_B_scaffold_1879_10
CN-SCN_Phenylobacterium_14x, CN-SCN_Phenylobacterium_14x, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8822..9289
DNA (468bp) protein (156aa)
Leucine-responsive regulatory protein n=184 Tax=Brucella RepID=A9MCK2_BRUC2
Putative AsnC family alanine catabolic operon regulator
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCN18_30_10_14_R1_B_scaffold_1879_11
Acetobacter malorum, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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9413..9928
DNA (516bp) protein (172aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL92443.1}; TaxID=178901 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter malorum.;"
SCN18_30_10_14_R1_B_scaffold_1879_12
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9937..10320
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002DA4421
Cytochrome c2 {ECO:0000313|EMBL:EJL37341.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
cytochrome c class I
SCN18_30_10_14_R1_B_scaffold_1879_13
SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10422..11828)
DNA (1407bp) protein (469aa)
Amino acid transporter n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UUC0_PSEUP
amino acid transporter
Amino acid transporter {ECO:0000313|EMBL:AER55009.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCN18_30_10_14_R1_B_scaffold_1879_14
SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_66_29, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11922..13919)
DNA (1998bp) protein (666aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IR65_KORVE
Uncharacterized protein {ECO:0000313|EMBL:KFL92444.1}; TaxID=178901 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter malorum.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1879_15
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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14557..17154
DNA (2598bp) protein (866aa)
TonB-dependent outer membrane receptor n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H3J5_CAUCN
TonB-dependent receptor
TonB-dependent receptor, putative {ECO:0000313|EMBL:AAK23077.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCN18_30_10_14_R1_B_scaffold_1879_16
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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17225..18523
DNA (1299bp) protein (433aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00035E8FFD
Uncharacterized protein {ECO:0000313|EMBL:EQB01948.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
FAD dependent oxidoreductase
SCN18_30_10_14_R1_B_scaffold_1879_17
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18934..19290)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002F0B1BA
tRNA-binding protein {ECO:0000313|EMBL:KHL26798.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
csaA; protein CsaA
SCN18_30_10_14_R1_B_scaffold_1879_18
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19465..20946
DNA (1482bp) protein (494aa)
gabd7; succinate-semialdehyde dehydrogenase (EC:1.2.1.16)
succinate-semialdehyde dehdyrogenase n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A60CED
Succinate-semialdehyde dehydrogenase GabD {ECO:0000313|EMBL:GAM01521.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCN18_30_10_14_R1_B_scaffold_1879_19
SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20963..22036
DNA (1074bp) protein (358aa)
tartrate dehydrogenase (EC:1.1.1.93)
tartrate dehydrogenase n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A6E7AA
D-malate dehydrogenase {ECO:0000313|EMBL:GAM01522.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCN18_30_10_14_R1_B_scaffold_1879_20
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22125..22619)
DNA (495bp) protein (165aa)
AsnC family transcriptional regulator n=2 Tax=Novosphingobium RepID=F6IDH8_9SPHN
AsnC family transcriptional regulator {ECO:0000313|EMBL:KHS44523.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
AsnC family transcriptional regulator
SCN18_30_10_14_R1_B_scaffold_1879_21
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22646..23371)
DNA (726bp) protein (242aa)
2-haloalkanoic acid dehalogenase n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XZV9_RHIRD
2-haloalkanoic acid dehalogenase {ECO:0000313|EMBL:EHH03613.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
2-haloalkanoic acid dehalogenase
SCN18_30_10_14_R1_B_scaffold_1879_22
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(23358..24734)
DNA (1377bp) protein (459aa)
hypothetical protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B54F42
BioA protein {ECO:0000313|EMBL:BAQ45769.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
aminotransferase class-III
SCN18_30_10_14_R1_B_scaffold_1879_23
SCNPILOT_EXPT_750_BF_Rhodanobacter_67_8_fragment, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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25688..26824
DNA (1137bp) protein (379aa)
Tail sheath protein n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0FAT2_9BURK
phage tail sheath protein
Phage tail sheath protein {ECO:0000313|EMBL:AJE85105.1}; TaxID=1888 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces albus.;"
Displaying 23 items

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