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SCN18_30_10_14_R1_B_scaffold_3406

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_3406_1
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..450)
DNA (450bp) protein (150aa)
60 kDa chaperonin n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0IAL8_9SPHN
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
groEL; molecular chaperone GroEL
SCN18_30_10_14_R1_B_scaffold_3406_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(502..789)
DNA (288bp) protein (96aa)
10 kDa chaperonin n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K2B3_9SPHN
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
molecular chaperone GroES
SCN18_30_10_14_R1_B_scaffold_3406_3
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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1249..2490
DNA (1242bp) protein (414aa)
glycosyl transferase family 1 n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000288FCF1
Group 1 glycosyl transferase {ECO:0000313|EMBL:EJU12040.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
group 1 glycosyl transferase
SCN18_30_10_14_R1_B_scaffold_3406_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2582..4486
DNA (1905bp) protein (635aa)
Protease 4 {ECO:0000256|PIRNR:PIRNR001217}; EC=3.4.21.- {ECO:0000256|PIRNR:PIRNR001217};; Endopeptidase IV {ECO:0000256|PIRNR:PIRNR001217}; Protease IV {ECO:0000256|PIRNR:PIRNR001217}; Signal peptide peptidase {ECO:0000256|PIRNR:PIRNR001217}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Protease IV n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIS5_9SPHN
sppA; protease IV
SCN18_30_10_14_R1_B_scaffold_3406_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4556..5239)
DNA (684bp) protein (228aa)
Conserved hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIS3_9SPHN
hypothetical protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAK64753.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3406_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5311..5889
DNA (579bp) protein (193aa)
Putative flavoprotein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIS2_9SPHN
putative flavoprotein
Putative flavoprotein {ECO:0000313|EMBL:BAK64752.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3406_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6156..6632)
DNA (477bp) protein (159aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
pdhD; dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MKT1_9SPHN
SCN18_30_10_14_R1_B_scaffold_3406_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6611..7474)
DNA (864bp) protein (288aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0ICC3_9SPHN
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
SCN18_30_10_14_R1_B_scaffold_3406_9
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7559..8818)
DNA (1260bp) protein (420aa)
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC=2.3.1.61;; 2-oxoglutarate dehydrogenase complex component E2 {ECO:0000256|RuleBase:RU361138}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
2-oxoglutarate dehydrogenase E2 component n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIR9_9SPHN
sucB; 2-oxoglutarate dehydrogenase E2 component
SCN18_30_10_14_R1_B_scaffold_3406_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8858..11677)
DNA (2820bp) protein (940aa)
2-oxoglutarate dehydrogenase E1 component {ECO:0000313|EMBL:BAK64748.1}; EC=1.2.4.2 {ECO:0000313|EMBL:BAK64748.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
2-oxoglutarate dehydrogenase E1 component n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIR8_9SPHN
sucA; 2-oxoglutarate dehydrogenase E1
SCN18_30_10_14_R1_B_scaffold_3406_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11784..12668)
DNA (885bp) protein (295aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIR7_9SPHN
sucD; succinyl-CoA synthetase subunit alpha
SCN18_30_10_14_R1_B_scaffold_3406_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13085..14047)
DNA (963bp) protein (321aa)
malate dehydrogenase (EC:1.1.1.37)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904};; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
Malate dehydrogenase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RXR6_9SPHN
SCN18_30_10_14_R1_B_scaffold_3406_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14194..15654)
DNA (1461bp) protein (487aa)
SCN18_30_10_14_R1_B_scaffold_3406_14
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15747..16838)
DNA (1092bp) protein (364aa)
Putative glycosyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIR4_9SPHN
putative glycosyltransferase
Putative glycosyltransferase {ECO:0000313|EMBL:BAK64744.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3406_15
SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16858..18078)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM67 RepID=J2V2A3_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EJM93659.1}; TaxID=1144335 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM67.;"
glycosyl transferase
SCN18_30_10_14_R1_B_scaffold_3406_16
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18072..19529)
DNA (1458bp) protein (486aa)
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase n=1 Tax=Pseudomonas sp. GM67 RepID=J3HF58_9PSED
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase {ECO:0000313|EMBL:EJM93660.1}; TaxID=1144335 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM67.;"
UbiA prenyltransferase
SCN18_30_10_14_R1_B_scaffold_3406_17
CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, Mobile_element

Not on your lists

comp(19522..19893)
DNA (372bp) protein (124aa)
EamA-like transporter family n=1 Tax=Pseudomonas sp. GM67 RepID=J2ULP0_9PSED
EamA-like transporter family {ECO:0000313|EMBL:EJM93661.1}; Flags: Precursor;; TaxID=1144335 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM67.;"
putative Small Multi-Drug resistant family protein
SCN18_30_10_14_R1_B_scaffold_3406_18
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19962..21077)
DNA (1116bp) protein (372aa)
Putative ATPase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIR3_9SPHN
putative ATPase
Putative ATPase {ECO:0000313|EMBL:BAK64743.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3406_19
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21106..21891)
DNA (786bp) protein (262aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Succinate dehydrogenase iron-sulfur subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIR1_9SPHN
sdhB; succinate dehydrogenase iron-sulfur subunit
SCN18_30_10_14_R1_B_scaffold_3406_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22076..22501)
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIQ9_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64739.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3406_21
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22654..23142
DNA (489bp) protein (163aa)
Putative dipeptidase {ECO:0000313|EMBL:BAK64738.1}; EC=3.4.13.- {ECO:0000313|EMBL:BAK64738.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative dipeptidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIQ8_9SPHN
putative dipeptidase
Displaying 21 items

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