ggKbase home page

SCN18_30_10_14_R1_B_scaffold_3974_11

Organism: SCN18_30_10_14_R1_B_Sphingobium_66_9

near complete RP 48 / 55 BSCG 50 / 51 MC: 1 ASCG 10 / 38
Location: comp(11043..11408)

Top 3 Functional Annotations

Value Algorithm Source
Integration host factor subunit alpha n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMA5_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 88.8
  • Coverage: 98.0
  • Bit_score: 172
  • Evalue 1.70e-40
ihfA; integration host factor subunit alpha similarity KEGG
DB: KEGG
  • Identity: 88.8
  • Coverage: 98.0
  • Bit_score: 172
  • Evalue 4.90e-41
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.8
  • Coverage: 98.0
  • Bit_score: 172
  • Evalue 2.40e-40

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55 → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 366
ACTGACGCAGAGACCGGGTTGTGGACATGTGGGGGCATGGCCGCCTCCCATTCCGTTGTTGGGGGCGAAATGAGTTCTGAAGATACTTTGACCCGTGCCGAGATCGCGGAAAGACTGAACCGTCAGATCGGCCTGTCCCGTGCTGAATCCGCACAGATTGTCGAGCAGGTGCTGGACCTTGTGAGCGAGGCGCTCGAACAGGGTGAGAACGTCAAGATTTCTGGCTTTGGTACATTCGTGCTGCGCGACAAGAATGAGCGCGTGGGCCGAAATCCCAAGACCGGGATCGAGGTTCCCATCACGCCGCGTCGCGTGCTCACATTCCGGCCCAGCCAGTCGCTGCGCGATCGCGTCGCCGGAGTCTGA
PROTEIN sequence
Length: 122
TDAETGLWTCGGMAASHSVVGGEMSSEDTLTRAEIAERLNRQIGLSRAESAQIVEQVLDLVSEALEQGENVKISGFGTFVLRDKNERVGRNPKTGIEVPITPRRVLTFRPSQSLRDRVAGV*