ggKbase home page

SCN18_10_11_15_R5_B_scaffold_82

Search features with annotation key words

Displaying items 1-30 of 168 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R5_B_scaffold_82_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1624)
DNA (1623bp) protein (541aa)
biotin transporter BioY n=1 Tax=Roseomonas sp. B5 RepID=UPI000307F8C3
Dimethyl sulfoxide/trimethylamine N-oxide reductase {ECO:0000313|EMBL:CEJ11358.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
biotin transporter BioY
SCN18_10_11_15_R5_B_scaffold_82_2
unknown

Not on your lists

1779..2273
DNA (495bp) protein (165aa)

This feature has no annotations

SCN18_10_11_15_R5_B_scaffold_82_3
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2270..2983)
DNA (714bp) protein (238aa)
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IR46_RHOP2
High-affinity branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:CEJ11357.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter
SCN18_10_11_15_R5_B_scaffold_82_4
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2980..4740)
DNA (1761bp) protein (587aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P4V5_9BRAD
Xylose import ATP-binding protein XylG {ECO:0000313|EMBL:CEJ11356.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter-like protein
SCN18_10_11_15_R5_B_scaffold_82_5
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4744..5781)
DNA (1038bp) protein (346aa)
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07K10_RHOP5
High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:CEJ11355.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
inner-membrane translocator
SCN18_10_11_15_R5_B_scaffold_82_6
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6021..6530
DNA (510bp) protein (170aa)
Transcriptional regulator, MarR family n=2 Tax=Rhodopseudomonas palustris RepID=Q6N8V9_RHOPA
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ACF00519.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCN18_10_11_15_R5_B_scaffold_82_7
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6652..7170
DNA (519bp) protein (173aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4TML5_9RHIZ
SCN18_10_11_15_R5_B_scaffold_82_8
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7167..8099
DNA (933bp) protein (311aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035EF39E
methionyl-tRNA formyltransferase
SCN18_10_11_15_R5_B_scaffold_82_9
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8099..8896
DNA (798bp) protein (266aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
tRNA pseudouridine synthase A n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0W983_RHILT
tRNA pseudouridine synthase A
SCN18_10_11_15_R5_B_scaffold_82_10
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9220..10380)
DNA (1161bp) protein (387aa)
Succinyl-diaminopimelate desuccinylase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=DAPE_RHOPS
Succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:CEJ11351.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
succinyl-diaminopimelate desuccinylase
SCN18_10_11_15_R5_B_scaffold_82_11
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10377..10838)
DNA (462bp) protein (154aa)
Inner membrane protein YhaI {ECO:0000313|EMBL:CEJ11350.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCN18_10_11_15_R5_B_scaffold_82_12
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10959..11426)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UBZ3_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:CEJ11349.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCN18_10_11_15_R5_B_scaffold_82_13
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11455..12297)
DNA (843bp) protein (281aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013419}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013404};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CFH8_9RHOB
dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
SCN18_10_11_15_R5_B_scaffold_82_14
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12533..13063
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TTW8_9RHOB
Catechol-2,3-dioxygenase {ECO:0000313|EMBL:CEJ11347.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
glyoxalase
SCN18_10_11_15_R5_B_scaffold_82_15
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13087..14100)
DNA (1014bp) protein (338aa)
Putative NADP-dependent oxidoreductase YfmJ {ECO:0000313|EMBL:CEJ11346.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein; K07119 id=5081644 bin=GWF1_Burkholderiales_GWF1_66_17 species=Sphingomonas sp. SKA58 genus=Sphingomonas taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
SCN18_10_11_15_R5_B_scaffold_82_16
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14199..14879)
DNA (681bp) protein (227aa)
Putative transcriptional regulator, TetR family n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07RA8_RHOP5
TetR family transcriptional regulator
Putative transcriptional regulator, TetR family {ECO:0000313|EMBL:ABJ05526.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCN18_10_11_15_R5_B_scaffold_82_17
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14987..16390
DNA (1404bp) protein (468aa)
Lignostilbene-alpha,beta-dioxygenase-like enzyme n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3CR63_9BRAD
Carotenoid oxygenase {ECO:0000313|EMBL:KJC39541.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
carotenoid oxygenase
SCN18_10_11_15_R5_B_scaffold_82_18
unknown

Not on your lists

16624..16869
DNA (246bp) protein (82aa)

This feature has no annotations

SCN18_10_11_15_R5_B_scaffold_82_19
unknown

Not on your lists

16927..17184
DNA (258bp) protein (86aa)

This feature has no annotations

SCN18_10_11_15_R5_B_scaffold_82_20
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17332..17913
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07LI4_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ07200.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCN18_10_11_15_R5_B_scaffold_82_21
SCNPILOT_CONT_750_P_Burkholderiales_64_62, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18058..18273
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13TS7_BURXL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE32512.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
SCN18_10_11_15_R5_B_scaffold_82_22
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18339..20195)
DNA (1857bp) protein (619aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
thiC; phosphomethylpyrimidine synthase ThiC (EC:4.-.-.-)
Phosphomethylpyrimidine synthase n=2 Tax=Oligotropha carboxidovorans RepID=THIC_OLICO
SCN18_10_11_15_R5_B_scaffold_82_23
unknown

Not on your lists

comp(20209..20367)
DNA (159bp) protein (53aa)

This feature has no annotations

SCN18_10_11_15_R5_B_scaffold_82_24
SCNPILOT_CONT_750_P_Burkholderiales_64_62, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20646..20945
DNA (300bp) protein (100aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Pseudomonas putida SJ3 RepID=U7RI21_PSEPU
Variovorax paradoxus strain MEDvA23 contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35430.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCN18_10_11_15_R5_B_scaffold_82_25
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21109..21993
DNA (885bp) protein (295aa)
Acetylglutamate kinase {ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.- {ECO:0000256|SAAS:SAAS00277142};; EC=2.7.2.8 {ECO:0000256|SAAS:SAAS00245383};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Acetylglutamate kinase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UBZ6_9RHOB
acetylglutamate kinase
SCN18_10_11_15_R5_B_scaffold_82_26
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21962..23008
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 PF48_9RHOB">RepID=J5PF48_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:CEJ11342.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
peptidoglycan binding domain-containing protein
SCN18_10_11_15_R5_B_scaffold_82_27
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23008..23706
DNA (699bp) protein (233aa)
Pyridoxal-5'-phosphate phosphatase , Alphaproteobacterial type n=1 Tax=Rhodovulum sp. PH10 RepID=J6UAX8_9RHOB
Haloacid dehalogenase-like hydrolase {ECO:0000313|EMBL:CEJ11341.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
pyrimidine 5-nucleotidase
SCN18_10_11_15_R5_B_scaffold_82_28
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24205..25683)
DNA (1479bp) protein (493aa)
Putative uncharacterized protein n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CMJ0_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:CEJ11340.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCN18_10_11_15_R5_B_scaffold_82_29
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25696..26637)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J458_POLGS
Uncharacterized protein {ECO:0000313|EMBL:CEJ11339.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCN18_10_11_15_R5_B_scaffold_82_30
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26661..27854)
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UQN8_METS4
Uncharacterized protein {ECO:0000313|EMBL:CEJ11338.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
Displaying items 1-30 of 168 in total

View Taxonomy