name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCN18_10_11_15_R5_B_scaffold_82_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2..1624)
|
biotin transporter BioY n=1 Tax=Roseomonas sp. B5 RepID=UPI000307F8C3
Dimethyl sulfoxide/trimethylamine N-oxide reductase {ECO:0000313|EMBL:CEJ11358.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
biotin transporter BioY
|
|
SCN18_10_11_15_R5_B_scaffold_82_2
unknown
|
Not on your lists |
1779..2273
|
This feature has no annotations |
|
SCN18_10_11_15_R5_B_scaffold_82_3
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2270..2983)
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ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IR46_RHOP2
High-affinity branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:CEJ11357.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter
|
|
SCN18_10_11_15_R5_B_scaffold_82_4
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2980..4740)
|
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P4V5_9BRAD
Xylose import ATP-binding protein XylG {ECO:0000313|EMBL:CEJ11356.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter-like protein
|
|
SCN18_10_11_15_R5_B_scaffold_82_5
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4744..5781)
|
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07K10_RHOP5
High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:CEJ11355.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
inner-membrane translocator
|
|
SCN18_10_11_15_R5_B_scaffold_82_6
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6021..6530
|
Transcriptional regulator, MarR family n=2 Tax=Rhodopseudomonas palustris RepID=Q6N8V9_RHOPA
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ACF00519.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
|
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SCN18_10_11_15_R5_B_scaffold_82_7
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6652..7170
|
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4TML5_9RHIZ
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SCN18_10_11_15_R5_B_scaffold_82_8
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7167..8099
|
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035EF39E
methionyl-tRNA formyltransferase
|
|
SCN18_10_11_15_R5_B_scaffold_82_9
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8099..8896
|
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
tRNA pseudouridine synthase A n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0W983_RHILT
tRNA pseudouridine synthase A
|
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SCN18_10_11_15_R5_B_scaffold_82_10
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9220..10380)
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Succinyl-diaminopimelate desuccinylase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=DAPE_RHOPS
Succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:CEJ11351.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
succinyl-diaminopimelate desuccinylase
|
|
SCN18_10_11_15_R5_B_scaffold_82_11
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10377..10838)
|
Inner membrane protein YhaI {ECO:0000313|EMBL:CEJ11350.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
|
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SCN18_10_11_15_R5_B_scaffold_82_12
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10959..11426)
|
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UBZ3_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:CEJ11349.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
|
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SCN18_10_11_15_R5_B_scaffold_82_13
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11455..12297)
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013419}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013404};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CFH8_9RHOB
dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
|
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SCN18_10_11_15_R5_B_scaffold_82_14
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12533..13063
|
Uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TTW8_9RHOB
Catechol-2,3-dioxygenase {ECO:0000313|EMBL:CEJ11347.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
glyoxalase
|
|
SCN18_10_11_15_R5_B_scaffold_82_15
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(13087..14100)
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Putative NADP-dependent oxidoreductase YfmJ {ECO:0000313|EMBL:CEJ11346.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein; K07119 id=5081644 bin=GWF1_Burkholderiales_GWF1_66_17 species=Sphingomonas sp. SKA58 genus=Sphingomonas taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
|
|
SCN18_10_11_15_R5_B_scaffold_82_16
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14199..14879)
|
Putative transcriptional regulator, TetR family n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07RA8_RHOP5
TetR family transcriptional regulator
Putative transcriptional regulator, TetR family {ECO:0000313|EMBL:ABJ05526.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
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SCN18_10_11_15_R5_B_scaffold_82_17
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14987..16390
|
Lignostilbene-alpha,beta-dioxygenase-like enzyme n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3CR63_9BRAD
Carotenoid oxygenase {ECO:0000313|EMBL:KJC39541.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
carotenoid oxygenase
|
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SCN18_10_11_15_R5_B_scaffold_82_18
unknown
|
Not on your lists |
16624..16869
|
This feature has no annotations |
|
SCN18_10_11_15_R5_B_scaffold_82_19
unknown
|
Not on your lists |
16927..17184
|
This feature has no annotations |
|
SCN18_10_11_15_R5_B_scaffold_82_20
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17332..17913
|
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07LI4_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ07200.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
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SCN18_10_11_15_R5_B_scaffold_82_21
SCNPILOT_CONT_750_P_Burkholderiales_64_62, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18058..18273
|
Putative uncharacterized protein n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13TS7_BURXL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE32512.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
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SCN18_10_11_15_R5_B_scaffold_82_22
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18339..20195)
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Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
thiC; phosphomethylpyrimidine synthase ThiC (EC:4.-.-.-)
Phosphomethylpyrimidine synthase n=2 Tax=Oligotropha carboxidovorans RepID=THIC_OLICO
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SCN18_10_11_15_R5_B_scaffold_82_23
unknown
|
Not on your lists |
comp(20209..20367)
|
This feature has no annotations |
|
SCN18_10_11_15_R5_B_scaffold_82_24
SCNPILOT_CONT_750_P_Burkholderiales_64_62, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20646..20945
|
Antibiotic biosynthesis monooxygenase n=1 Tax=Pseudomonas putida SJ3 RepID=U7RI21_PSEPU
Variovorax paradoxus strain MEDvA23 contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35430.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
|
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SCN18_10_11_15_R5_B_scaffold_82_25
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21109..21993
|
Acetylglutamate kinase {ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.- {ECO:0000256|SAAS:SAAS00277142};; EC=2.7.2.8 {ECO:0000256|SAAS:SAAS00245383};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Acetylglutamate kinase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UBZ6_9RHOB
acetylglutamate kinase
|
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SCN18_10_11_15_R5_B_scaffold_82_26
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21962..23008
|
Uncharacterized protein {ECO:0000313|EMBL:CEJ11342.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
peptidoglycan binding domain-containing protein
|
|
SCN18_10_11_15_R5_B_scaffold_82_27
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23008..23706
|
Pyridoxal-5'-phosphate phosphatase , Alphaproteobacterial type n=1 Tax=Rhodovulum sp. PH10 RepID=J6UAX8_9RHOB
Haloacid dehalogenase-like hydrolase {ECO:0000313|EMBL:CEJ11341.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
pyrimidine 5-nucleotidase
|
|
SCN18_10_11_15_R5_B_scaffold_82_28
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24205..25683)
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Putative uncharacterized protein n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CMJ0_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:CEJ11340.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
|
|
SCN18_10_11_15_R5_B_scaffold_82_29
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25696..26637)
|
Uncharacterized protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J458_POLGS
Uncharacterized protein {ECO:0000313|EMBL:CEJ11339.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
|
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SCN18_10_11_15_R5_B_scaffold_82_30
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26661..27854)
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Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UQN8_METS4
Uncharacterized protein {ECO:0000313|EMBL:CEJ11338.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
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