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SCN18_10_11_15_R5_B_scaffold_256

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R5_B_scaffold_256_1
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..120
DNA (120bp) protein (40aa)
Transposase IS111A/IS1328/IS1533 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IF08_METNO
transposase IS111A/IS1328/IS1533
Transposase IS111A/IS1328/IS1533 {ECO:0000313|EMBL:ACL55315.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCN18_10_11_15_R5_B_scaffold_256_2
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(204..920)
DNA (717bp) protein (239aa)
Transcriptional regulator n=1 Tax=Oceanibaculum indicum P24 RepID=K2IXB5_9PROT
Putative HTH-type transcriptional regulator YvdT {ECO:0000313|EMBL:CEJ15878.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCN18_10_11_15_R5_B_scaffold_256_3
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1018..2223)
DNA (1206bp) protein (402aa)
Leu/Ile/Val-binding protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TWP7_TISMK
Uncharacterized protein {ECO:0000313|EMBL:CEJ15879.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter permease
SCN18_10_11_15_R5_B_scaffold_256_4
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2425..4029
DNA (1605bp) protein (535aa)
AMP-dependent synthetase and ligase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IG06_XANP2
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:CEJ15880.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
AMP-dependent synthetase and ligase
SCN18_10_11_15_R5_B_scaffold_256_5
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4026..4829
DNA (804bp) protein (268aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V515_SPHWW
Putative enoyl-CoA hydratase echA8 {ECO:0000313|EMBL:CEJ15881.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
enoyl-CoA hydratase/isomerase
SCN18_10_11_15_R5_B_scaffold_256_6
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4826..5599
DNA (774bp) protein (258aa)
Short chain dehydrogenase n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2E7S0_9BURK
Glucose 1-dehydrogenase {ECO:0000313|EMBL:CEJ15882.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
short-chain dehydrogenase/reductase SDR
SCN18_10_11_15_R5_B_scaffold_256_7
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5800..6576)
DNA (777bp) protein (259aa)
Putative transcriptional regulator n=2 Tax=Pseudomonas putida RepID=E4RCD1_PSEPB
Transcriptional regulator {ECO:0000313|EMBL:ETR78303.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
transcriptional regulator
SCN18_10_11_15_R5_B_scaffold_256_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6746..8059
DNA (1314bp) protein (438aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K1J8_9SPHN
Luciferase {ECO:0000313|EMBL:ETR78304.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
putative monooxygenase
SCN18_10_11_15_R5_B_scaffold_256_9
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8067..8825
DNA (759bp) protein (253aa)
Putative oxidoreductase, short-chain dehydrogenase/reductase n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U144_9RHOB
Short-chain dehydrogenase {ECO:0000313|EMBL:ETR78305.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
butA; oxidoreductase, short-chain dehydrogenase/reductase
SCN18_10_11_15_R5_B_scaffold_256_10
CN-SCN_Lautropia_89x, CN-SCN_Lautropia_89x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8844..10148
DNA (1305bp) protein (435aa)
Probable substrate-binding protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U161_9RHOB
Substrate-binding protein {ECO:0000313|EMBL:ETR78306.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
substrate-binding protein
SCN18_10_11_15_R5_B_scaffold_256_11
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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10408..11280
DNA (873bp) protein (291aa)
Putative transcriptional regulator putative regucalcin family protein n=1 Tax=Pseudomonas putida (strain BIRD-1) RepID=E4RCD3_PSEPB
Calcium-binding protein {ECO:0000313|EMBL:ETR77053.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
Putative transcriptional regulator; putative regucalcin family protein
SCN18_10_11_15_R5_B_scaffold_256_12
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11297..13432
DNA (2136bp) protein (712aa)
PauA n=2 Tax=Pseudomonas putida RepID=E4RCD4_PSEPB
Pimeloyl-CoA synthetase {ECO:0000313|EMBL:ETR78307.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
yfiQ; pimeloyl-CoA synthetase
SCN18_10_11_15_R5_B_scaffold_256_13
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13429..13968
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CNZ3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL75564.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
NTF2 domain-containing protein
SCN18_10_11_15_R5_B_scaffold_256_14
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14030..15610
DNA (1581bp) protein (527aa)
Short chain dehydrogenase {ECO:0000313|EMBL:EAQ02032.1}; EC=1.1.1.- {ECO:0000313|EMBL:EAQ02032.1};; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
Short chain dehydrogenase n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U149_9RHOB
short-chain dehydrogenase/reductase SDR
SCN18_10_11_15_R5_B_scaffold_256_15
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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15982..16632
DNA (651bp) protein (217aa)
NADPH-dependent FMN reductase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11BZ6_MESSB
NADPH-dependent FMN reductase
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ABG65079.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCN18_10_11_15_R5_B_scaffold_256_16
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16662..17525)
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Methyloversatilis sp. NVD RepID=UPI00036FB972
HTH-type transcriptional regulator KipR {ECO:0000313|EMBL:CEJ12960.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
kipR; IclR family regulatory protein
SCN18_10_11_15_R5_B_scaffold_256_17
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17705..19342
DNA (1638bp) protein (546aa)
Acetolactate synthase, large subunit protein (Thiamine pyrophosphate-dependent enzyme) n=1 Tax=alpha proteobacterium BAL199 RepID=A8TPH6_9PROT
Acetolactate synthase isozyme 2 large subunit {ECO:0000313|EMBL:CEJ12961.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCN18_10_11_15_R5_B_scaffold_256_18
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19462..20448
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJD6_9BURK
Tripartite tricarboxylate transporter family receptor {ECO:0000313|EMBL:CEJ12962.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
bug; ABC transporter substrate-binding protein
SCN18_10_11_15_R5_B_scaffold_256_19
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20495..22168
DNA (1674bp) protein (558aa)
Putative monooxygenase, FAD-binding protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJD7_9BURK
2,4-dichlorophenol 6-monooxygenase {ECO:0000313|EMBL:CEJ12963.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
cadA; hypothetical protein
SCN18_10_11_15_R5_B_scaffold_256_20
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22231..23028)
DNA (798bp) protein (266aa)
ribosyldihydronicotinamide dehydrogenase (EC:1.10.99.2)
Putative NADPH-quinone reductase (Modulator of drug activity B) n=1 Tax=Caulobacter sp. AP07 RepID=J2HGK1_9CAUL
Putative NADPH-quinone reductase (Modulator of drug activity B) {ECO:0000313|EMBL:EJL34783.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
SCN18_10_11_15_R5_B_scaffold_256_21
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23125..24090
DNA (966bp) protein (322aa)
UPI0003D00DF3 related cluster n=1 Tax=unknown RepID=UPI0003D00DF3
LysR family transcriptional regulator {ECO:0000313|EMBL:ESZ19791.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
transcriptional regulator
SCN18_10_11_15_R5_B_scaffold_256_22
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24094..24552)
DNA (459bp) protein (153aa)
Transcription regulator AsnC-type-like protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YES8_9RHIZ
Leucine-responsive regulatory protein {ECO:0000313|EMBL:CEJ12964.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
transcriptional regulator
SCN18_10_11_15_R5_B_scaffold_256_23
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24671..25960
DNA (1290bp) protein (430aa)
methionine gamma-lyase (EC:4.4.1.11)
methionine gamma-lyase n=1 Tax=Rhizobium loti RepID=UPI00037BA5FE
Methionine gamma-lyase {ECO:0000313|EMBL:CEJ12965.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCN18_10_11_15_R5_B_scaffold_256_24
Enterobacter cloacae_SCNPILOT_CONT_500_P_Enterobacter_55_6.1, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26279..29113)
DNA (2835bp) protein (945aa)
ClpA/B protease ATP binding subunit n=1 Tax=Pseudomonas aeruginosa BL13 RepID=U9IFI0_PSEAI
ATP-dependent Clp protease ATP-binding subunit ClpC {ECO:0000313|EMBL:CEJ12970.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ATPase
SCN18_10_11_15_R5_B_scaffold_256_25
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(29306..30409)
DNA (1104bp) protein (368aa)
hypothetical protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI000309AF5C
Glycine cleavage system T protein (Aminomethyltransferase) {ECO:0000313|EMBL:KFC65333.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
oxidoreductase
SCN18_10_11_15_R5_B_scaffold_256_26
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30648..31478)
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI000380744B
Glycine cleavage system transcriptional activator {ECO:0000313|EMBL:CEJ14732.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
phosphonate operon transcriptional regulator LysR family
SCN18_10_11_15_R5_B_scaffold_256_27
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31697..32971
DNA (1275bp) protein (425aa)
Phosphonoacetate hydrolase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4TFK7_9RHIZ
Phosphonoacetate hydrolase {ECO:0000313|EMBL:CEJ14733.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
phosphonoacetate hydrolase
SCN18_10_11_15_R5_B_scaffold_256_28
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32968..34269
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RHX6_9RHIZ
Type I phosphodiesterase / nucleotide pyrophosphatase {ECO:0000313|EMBL:CEJ12971.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCN18_10_11_15_R5_B_scaffold_256_29
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34288..35820
DNA (1533bp) protein (511aa)
Substrate binding component of ABC transporter n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RP19_9RHIZ
Glutathione-binding protein GsiB {ECO:0000313|EMBL:CEJ14735.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
substrate binding component of ABC transporter
SCN18_10_11_15_R5_B_scaffold_256_30
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35838..36737
DNA (900bp) protein (300aa)
Putative oligopeptide ABC transporter, permease component n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RFJ8_9RHIZ
Glutathione transport system permease protein GsiD {ECO:0000313|EMBL:CEJ14736.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter inner membrane protein
Displaying items 1-30 of 41 in total

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