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SCN18_31_3_15_R1_B_scaffold_392

Search features with annotation key words

Displaying items 1-30 of 92 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_31_3_15_R1_B_scaffold_392_1
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1324)
DNA (1323bp) protein (441aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035CF526
cobN; Cobaltochelatase, CobN subunit
Cobaltochelatase, CobN subunit {ECO:0000313|EMBL:ADZ70457.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCN18_31_3_15_R1_B_scaffold_392_2
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1326..2330)
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003816C45
cobW; cobalamin biosynthesis CobW
Cobalamin biosynthesis CobW {ECO:0000313|EMBL:ADZ70456.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCN18_31_3_15_R1_B_scaffold_392_3
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2327..2860)
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037A69D4
Uncharacterized protein {ECO:0000313|EMBL:KGM34599.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
cobinamide kinase/cobinamide phosphate guanyltransferase superfamily protein
SCN18_31_3_15_R1_B_scaffold_392_4
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2868..3662)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1FVP8_9BURK
Membrane protein {ECO:0000313|EMBL:KGM30737.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
SCN18_31_3_15_R1_B_scaffold_392_5
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3682..3897)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HQC1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE95521.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
putative uncharacterized protein
SCN18_31_3_15_R1_B_scaffold_392_6
unknown

Not on your lists

3930..4661
DNA (732bp) protein (244aa)

This feature has no annotations

SCN18_31_3_15_R1_B_scaffold_392_trna_1
unknown

Not on your lists

4624..4696
DNA (73bp)
transferRNA Asn
SCN18_31_3_15_R1_B_scaffold_392_7
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4988..5350
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Segniliparus rugosus ATCC BAA-974 RepID=E5XKV4_9ACTO
FadF {ECO:0000313|EMBL:KHO30645.1}; TaxID=38301 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium minutissimum.;"
dihydrolipoamide S-succinyltransferase
SCN18_31_3_15_R1_B_scaffold_392_8
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5574..6596
DNA (1023bp) protein (341aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036AB298
acyltransferase
Acyltransferase 3 {ECO:0000313|EMBL:ABA03625.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCN18_31_3_15_R1_B_scaffold_392_9
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6653..8089
DNA (1437bp) protein (479aa)
deoxyribodipyrimidine photolyase (EC:4.1.99.3)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003775061
Deoxyribodipyrimidine photo-lyase {ECO:0000313|EMBL:GAB15482.1}; TaxID=1077972 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter globiformis NBRC 12137.;"
SCN18_31_3_15_R1_B_scaffold_392_10
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8145..9182
DNA (1038bp) protein (346aa)
Pyridoxal-5'-phosphate-dependent protein beta subunit n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A908_STAND
pyridoxal-5'-phosphate-dependent protein subunit beta
Pyridoxal-5'-phosphate-dependent protein beta subunit {ECO:0000313|EMBL:ADH88713.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCN18_31_3_15_R1_B_scaffold_392_11
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9188..10030)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Pseudogulbenkiania ferrooxidans EGD-HP2 RepID=U1AEP8_9NEIS
Uncharacterized protein {ECO:0000313|EMBL:ERE02454.1}; TaxID=1388764 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans EGD-HP2.;"
hypothetical protein
SCN18_31_3_15_R1_B_scaffold_392_12
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10168..10893
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003670B3F
Alanyl-transfer RNA synthetase {ECO:0000313|EMBL:EAV45007.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
alaS2; alanyl-tRNA synthetase
SCN18_31_3_15_R1_B_scaffold_392_13
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10890..11747
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035E03BE
Rhodanese domain protein {ECO:0000313|EMBL:KFC70413.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
rhodanese domain-containing protein
SCN18_31_3_15_R1_B_scaffold_392_14
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11900..13750
DNA (1851bp) protein (617aa)
OmpA/MotB n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21D92_RHOPB
OmpA/MotB
OmpA/MotB {ECO:0000313|EMBL:ABD85644.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCN18_31_3_15_R1_B_scaffold_392_15
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14144..14743)
DNA (600bp) protein (200aa)
Ankyrin repeat protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BIE6_OLICM
ankyrin
Ankyrin repeat protein {ECO:0000313|EMBL:AEI07004.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_31_3_15_R1_B_scaffold_392_16
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15043..16182
DNA (1140bp) protein (380aa)
Beta-lactamase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U6E6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB10752.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
beta-lactamase
SCN18_31_3_15_R1_B_scaffold_392_17
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16260..16688)
DNA (429bp) protein (143aa)
50S ribosomal protein L17 n=1 Tax=Kaistia granuli RepID=UPI0003716DFC
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
50S ribosomal protein L17
SCN18_31_3_15_R1_B_scaffold_392_18
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16716..17732)
DNA (1017bp) protein (339aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Kaistia granuli RepID=UPI00037DADD5
rpoA; DNA-directed RNA polymerase subunit alpha
SCN18_31_3_15_R1_B_scaffold_392_19
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17852..18241)
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=1 Tax=Kaistia granuli RepID=UPI00037540E1
30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000255|HAMAP-Rule:MF_01310}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCN18_31_3_15_R1_B_scaffold_392_20
CN-SCN_Phenylobacterium_14x, CN-SCN_Phenylobacterium_14x, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18326..18700)
DNA (375bp) protein (125aa)
30S ribosomal protein S13 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=RS13_METNO
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCN18_31_3_15_R1_B_scaffold_392_21
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18899..19483)
DNA (585bp) protein (195aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
Adenylate kinase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UG15_9RHOB
adenylate kinase
SCN18_31_3_15_R1_B_scaffold_392_22
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(19480..20811)
DNA (1332bp) protein (444aa)
preprotein translocase subunit SecY n=1 Tax=Kaistia granuli RepID=UPI0003789122
secY; Preprotein translocase, SecY subunit
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCN18_31_3_15_R1_B_scaffold_392_23
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(20824..21315)
DNA (492bp) protein (164aa)
50S ribosomal protein L15 n=1 Tax=Kaistia granuli RepID=UPI000362FC91
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
50S ribosomal protein L15
SCN18_31_3_15_R1_B_scaffold_392_24
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(21326..21526)
DNA (201bp) protein (67aa)
50S ribosomal protein L30 n=1 Tax=Kaistia granuli RepID=UPI00035FE4EC
rpmD; 50S ribosomal protein L30
50S ribosomal protein L30 {ECO:0000255|HAMAP-Rule:MF_01371}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCN18_31_3_15_R1_B_scaffold_392_25
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(21538..22110)
DNA (573bp) protein (191aa)
30S ribosomal protein S5 n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=RS5_RHOP5
rpsE; 30S ribosomal protein S5
30S ribosomal protein S5 {ECO:0000255|HAMAP-Rule:MF_01307}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCN18_31_3_15_R1_B_scaffold_392_26
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(22174..22530)
DNA (357bp) protein (119aa)
50S ribosomal protein L18 n=1 Tax=Kaistia granuli RepID=UPI00037C2F75
50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
SCN18_31_3_15_R1_B_scaffold_392_27
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(22543..23076)
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VT99_9RHIZ
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
rplF; 50S ribosomal protein L6
SCN18_31_3_15_R1_B_scaffold_392_28
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(23100..23495)
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Kaistia granuli RepID=UPI00036DACB2
rpsH; 30S ribosomal protein S8
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCN18_31_3_15_R1_B_scaffold_392_29
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(23509..23814)
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Rhodovulum sp. PH10 RepID=J5PPQ3_9RHOB
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1629720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae.;" source="Hyphomonadaceae bacterium BRH_c29.;"
rpsN; 30S ribosomal protein S14
Displaying items 1-30 of 92 in total

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