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SCN18_31_3_15_R1_B_scaffold_2052

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_31_3_15_R1_B_scaffold_2052_1
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

98..1051
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037D7E22
LysR family transcriptional regulator {ECO:0000313|EMBL:ETR77817.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
transcriptional regulator
SCN18_31_3_15_R1_B_scaffold_2052_2
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1967..2200
DNA (234bp) protein (78aa)
conjugal transfer protein TrbB n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00037895FA
Conjugative transfer protein TrbB {ECO:0000313|EMBL:EGP10320.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
P-type conjugative transfer ATPase TrbB
SCN18_31_3_15_R1_B_scaffold_2052_3
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2761..3267
DNA (507bp) protein (169aa)
RNA polymerase sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWB3_9RHIZ
RNA polymerase sigma factor {ECO:0000313|EMBL:EYR78140.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RNA polymerase sigma factor
SCN18_31_3_15_R1_B_scaffold_2052_4
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3491..4492
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036DC4BF
Uncharacterized protein {ECO:0000313|EMBL:KDP76492.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
fecR; putative iron transport regulator transmembrane protein
SCN18_31_3_15_R1_B_scaffold_2052_5
CN-SCN_Lautropia_15x, CN-SCN_Lautropia_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4590..7181
DNA (2592bp) protein (864aa)
TonB-dependent siderophore receptor n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M941_METRJ
Ferrichrome-iron receptor {ECO:0000313|EMBL:CEJ10287.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
TonB-dependent siderophore receptor
SCN18_31_3_15_R1_B_scaffold_2052_6
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7471..7809
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SQZ5_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA05296.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCN18_31_3_15_R1_B_scaffold_2052_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8551..9081
DNA (531bp) protein (177aa)
Fec I like protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SSZ0_NITWN
fec I like protein
Fec I like protein {ECO:0000313|EMBL:ABA04601.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCN18_31_3_15_R1_B_scaffold_2052_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9143..10099
DNA (957bp) protein (319aa)
FecR protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SSZ1_NITWN
FecR protein
FecR protein {ECO:0000313|EMBL:ABA04600.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCN18_31_3_15_R1_B_scaffold_2052_9
CN-SCN_Lautropia_15x, CN-SCN_Lautropia_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10384..12795
DNA (2412bp) protein (804aa)
TonB-dependent siderophore receptor n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WQY6_9BRAD
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EAQ37607.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
TonB-dependent siderophore receptor
SCN18_31_3_15_R1_B_scaffold_2052_10
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13210..13629
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037D7E22
HTH-type transcriptional regulator GltC {ECO:0000313|EMBL:CEJ16015.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
LysR family transcriptional regulator
SCN18_31_3_15_R1_B_scaffold_2052_11
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13939..14718
DNA (780bp) protein (260aa)
conjugal transfer protein TrbB n=1 Tax=Bradyrhizobium elkanii RepID=UPI000361A34C
trbB; conjugal transfer protein
Conjugal transfer protein {ECO:0000313|EMBL:AHY56306.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
SCN18_31_3_15_R1_B_scaffold_2052_12
unknown

Not on your lists

14715..14822
DNA (108bp) protein (36aa)

This feature has no annotations

SCN18_31_3_15_R1_B_scaffold_2052_13
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14891..15928)
DNA (1038bp) protein (346aa)
Adenine-specific methyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCY6_PELHB
adenine-specific methyltransferase
Adenine-specific methyltransferase {ECO:0000313|EMBL:AEQ52769.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCN18_31_3_15_R1_B_scaffold_2052_14
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16038..17735)
DNA (1698bp) protein (566aa)
Resolvase domain n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZJJ4_GLUDA
Resolvase {ECO:0000313|EMBL:KGJ19646.1}; TaxID=1525716 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 10990.;"
Resolvase domain
SCN18_31_3_15_R1_B_scaffold_2052_15
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17749..18129)
DNA (381bp) protein (127aa)
XRE family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1S9_9RHIZ
XRE family transcriptional regulator {ECO:0000313|EMBL:EYR78513.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator helix turn helix domain
SCN18_31_3_15_R1_B_scaffold_2052_16
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18119..18442)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EY56_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78514.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_31_3_15_R1_B_scaffold_2052_17
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18900..19130
DNA (231bp) protein (77aa)
Uncharacterized protein n=2 Tax=Rhizobium meliloti RepID=K0P5Z9_RHIML
Uncharacterized protein {ECO:0000313|EMBL:GAJ29127.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
hypothetical protein
SCN18_31_3_15_R1_B_scaffold_2052_18
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19474..20145
DNA (672bp) protein (224aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
DNA-methyltransferase n=1 Tax=Sphingobium baderi LL03 RepID=T0HUC0_9SPHN
DNA methylase N-4/N-6 domain-containing protein
SCN18_31_3_15_R1_B_scaffold_2052_19
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21037..21357
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00036E6369
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADU42459.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCN18_31_3_15_R1_B_scaffold_2052_20
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21577..21960)
DNA (384bp) protein (128aa)
PilT protein domain-containing protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0WHJ4_9RHIZ
hypothetical protein
PilT protein domain-containing protein {ECO:0000313|EMBL:EJZ22719.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
SCN18_31_3_15_R1_B_scaffold_2052_21
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21957..22157)
DNA (201bp) protein (67aa)
antitoxin n=1 Tax=Rhizobium leguminosarum RepID=UPI00036CA2D7
vapB; Antitoxin VapB32 (modular protein)
Antitoxin VapB32 (Modular protein) {ECO:0000313|EMBL:CDI12376.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
SCN18_31_3_15_R1_B_scaffold_2052_22
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22624..23010)
DNA (387bp) protein (129aa)
Transposase, IS4 family n=2 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3STW4_NITWN
transposase, IS4
Transposase, IS4 family {ECO:0000313|EMBL:ABA04277.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCN18_31_3_15_R1_B_scaffold_2052_23
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23128..23379)
DNA (252bp) protein (84aa)
Transposase n=2 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SU07_NITWN
transposase
Transposase {ECO:0000313|EMBL:ABA04234.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCN18_31_3_15_R1_B_scaffold_2052_24
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23582..24103
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00035D52D8
Uncharacterized protein {ECO:0000313|EMBL:KHJ54571.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
hypothetical protein
SCN18_31_3_15_R1_B_scaffold_2052_25
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24137..24424)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W869_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY79928.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
Displaying 25 items

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