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SCN18_25_1_16_R2_B_scaffold_455

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R2_B_scaffold_455_1
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(93..251)
DNA (159bp) protein (53aa)
Transposase IS3 n=1 Tax=Ochrobactrum intermedium 229E RepID=U4VCN3_9RHIZ
Transposase IS3 {ECO:0000313|EMBL:ERM00527.1}; TaxID=1337887 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium 229E.;"
transposase
SCN18_25_1_16_R2_B_scaffold_455_2
CN-SCN_Phenylobacterium_14x, CN-SCN_Phenylobacterium_14x, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(309..1220)
DNA (912bp) protein (304aa)
Integrase catalytic region n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IUK9_POLGS
integrase catalytic subunit
Integrase catalytic region {ECO:0000313|EMBL:ADZ69064.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCN18_25_1_16_R2_B_scaffold_455_3
SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, Plasmid-like

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1406..2023
DNA (618bp) protein (206aa)
type III restriction-modification system methylation subunit (EC:2.1.1.72)
Type III restriction-modification system methylation subunit {ECO:0000313|EMBL:BAQ15609.1}; EC=2.1.1.72 {ECO:0000313|EMBL:BAQ15609.1};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC460 RepID=V4Q700_9CAUL
SCN18_25_1_16_R2_B_scaffold_455_4
SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, Plasmid-like

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2020..4155
DNA (2136bp) protein (712aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC460 RepID=V4Q1Q1_9CAUL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAQ15608.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
SCN18_25_1_16_R2_B_scaffold_455_5
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4149..5270
DNA (1122bp) protein (374aa)
Putative ATP-dependent exoDNAse n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ESN8_BRASB
Uncharacterized protein {ECO:0000313|EMBL:BAR57858.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
ATP-dependent exoDNAse
SCN18_25_1_16_R2_B_scaffold_455_6
unknown

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5260..5550
DNA (291bp) protein (97aa)

This feature has no annotations

SCN18_25_1_16_R2_B_scaffold_455_7
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5632..7296
DNA (1665bp) protein (555aa)
Resolvase domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4C4_9BRAD
Resolvase domain protein {ECO:0000313|EMBL:EFI52804.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
resolvase
SCN18_25_1_16_R2_B_scaffold_455_8
SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, Verrucomicrobia

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7711..8709
DNA (999bp) protein (333aa)
Glutaminase {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476}; EC=3.5.1.2 {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
glutaminase (EC:3.5.1.2)
glutaminase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036B5543
SCN18_25_1_16_R2_B_scaffold_455_9
SCNPILOT_EXPT_1000_BF_Actinomycetales_Beutenbergia_73_13, SCNPILOT_EXPT_1000_BF_Actinomycetales_Beutenbergia_73_13, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8752..10404
DNA (1653bp) protein (551aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000373791D
Uncharacterized protein {ECO:0000313|EMBL:AHY53516.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
MFS transporter
SCN18_25_1_16_R2_B_scaffold_455_10
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10549..11112
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037CE708
Uncharacterized protein {ECO:0000313|EMBL:AHY49623.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_455_11
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11204..12658
DNA (1455bp) protein (485aa)
Amidohydrolase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07PW0_RHOP5
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:ABJ06024.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCN18_25_1_16_R2_B_scaffold_455_12
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12703..14298)
DNA (1596bp) protein (532aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003792F9E
glycine betaine ABC transporter substrate-binding protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCN18_25_1_16_R2_B_scaffold_455_13
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14291..15112)
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00038235B1
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIZ47517.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ABC transporter-like protein
SCN18_25_1_16_R2_B_scaffold_455_14
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15234..16175)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002D63087
Uncharacterized protein {ECO:0000313|EMBL:EKS27491.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_455_15
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16585..17484)
DNA (900bp) protein (300aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Afipia felis ATCC 53690 RepID=K8NS80_AFIFE
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EKS30325.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
HlyD family protein
SCN18_25_1_16_R2_B_scaffold_455_16
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17504..17701)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NMJ2_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30326.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_455_17
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17698..19776)
DNA (2079bp) protein (693aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJ59_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30327.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
fusaric acid resistance protein
SCN18_25_1_16_R2_B_scaffold_455_18
unknown

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20450..20821
DNA (372bp) protein (124aa)

This feature has no annotations

SCN18_25_1_16_R2_B_scaffold_455_trna_1
unknown

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comp(20988..21059)
DNA (72bp)
transferRNA Glu
SCN18_25_1_16_R2_B_scaffold_455_19
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21116..21448)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJH1_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63626.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_455_20
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21477..22412)
DNA (936bp) protein (312aa)
SCN18_25_1_16_R2_B_scaffold_455_21
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22741..23640
DNA (900bp) protein (300aa)
RNA polymerase sigma factor RpoH n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SPV7_NITWN
RNA polymerase factor sigma-32
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCN18_25_1_16_R2_B_scaffold_455_22
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23766..24983)
DNA (1218bp) protein (406aa)
Diguanylate cyclase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJG8_NITHX
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:ABE63629.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_455_23
SCNPILOT_CONT_750_P_Acinetobacter_38_24_partial, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25656..26510
DNA (855bp) protein (285aa)
acetoin dehydrogenase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036B3F1B
Bradyrhizobium elkanii strain UASWS1015 Contig163, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51803.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
short-chain dehydrogenase
SCN18_25_1_16_R2_B_scaffold_455_24
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26520..27335)
DNA (816bp) protein (272aa)
Lytic murein transglycosylase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJG7_NITHX
lytic murein transglycosylase
Lytic murein transglycosylase {ECO:0000313|EMBL:ABE63630.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_455_25
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27525..28142)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NMG5_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30291.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_455_26
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28746..29045)
DNA (300bp) protein (100aa)
RNA polymerase sigma factor RpoD n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E332BF
rpoD; RNA polymerase sigma factor RpoD
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Displaying 27 items

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