name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCN18_25_1_16_R2_B_scaffold_499_1
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(3..650)
----------------- DNA (648bp) protein (216aa) |
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000255|HAMAP-Rule:MF_00639}; EC=6.3.2.9 {ECO:0000255|HAMAP-Rule:MF_00639};; D-glutamic acid-adding enzyme {ECO:0000255|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000255|HAMAP-Rule:MF_00639}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=MURD_NITHX
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SCN18_25_1_16_R2_B_scaffold_499_2
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(657..1760)
----------------- DNA (1104bp) protein (368aa) |
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000255|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000255|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000255|HAMAP-Rule:MF_00038}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=MRAY_NITHX
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SCN18_25_1_16_R2_B_scaffold_499_3
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(1933..3372)
----------------- DNA (1440bp) protein (480aa) |
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNU7_NITHX
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase
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SCN18_25_1_16_R2_B_scaffold_499_4
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(3369..4826)
----------------- DNA (1458bp) protein (486aa) |
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNU8_NITHX
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SCN18_25_1_16_R2_B_scaffold_499_5
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(4863..6614)
----------------- DNA (1752bp) protein (584aa) |
Peptidoglycan glycosyltransferase {ECO:0000313|EMBL:ABE62098.1}; EC=2.4.1.129 {ECO:0000313|EMBL:ABE62098.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Peptidoglycan glycosyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNU9_NITHX
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SCN18_25_1_16_R2_B_scaffold_499_6
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(6611..6994)
----------------- DNA (384bp) protein (128aa) |
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNV0_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62097.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
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SCN18_25_1_16_R2_B_scaffold_499_7
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(6998..7993)
----------------- DNA (996bp) protein (332aa) |
Ribosomal RNA small subunit methyltransferase H {ECO:0000255|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000255|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000255|HAMAP-Rule:MF_01007}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Ribosomal RNA small subunit methyltransferase H n=2 Tax=Nitrobacter hamburgensis RepID=RSMH_NITHX
mraW; S-adenosyl-methyltransferase MraW
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SCN18_25_1_16_R2_B_scaffold_499_8
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
8502..9365
----------------- DNA (864bp) protein (288aa) |
Negative regulator of AmpC, AmpD n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNV2_NITHX
negative regulator of AmpC, AmpD
Negative regulator of AmpC, AmpD {ECO:0000313|EMBL:ABE62095.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
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SCN18_25_1_16_R2_B_scaffold_499_9
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(9362..10612)
----------------- DNA (1251bp) protein (417aa) |
RNA polymerase subunit sigma-24 n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003620644
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KJC61130.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
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SCN18_25_1_16_R2_B_scaffold_499_10
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(10637..10987)
----------------- DNA (351bp) protein (117aa) |
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2W4P9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJN13642.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
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SCN18_25_1_16_R2_B_scaffold_499_11
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
11283..12704
----------------- DNA (1422bp) protein (474aa) |
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NHC8_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27849.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
MFS transporter
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SCN18_25_1_16_R2_B_scaffold_499_12
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
12715..12873
----------------- DNA (159bp) protein (53aa) |
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SCN18_25_1_16_R2_B_scaffold_499_13
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
12883..13011
----------------- DNA (129bp) protein (43aa) |
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DEE3_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL10699.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
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SCN18_25_1_16_R2_B_scaffold_499_14
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(13076..13975)
----------------- DNA (900bp) protein (300aa) |
transcriptional regulator n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003169382
LysR family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:BAL10701.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
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SCN18_25_1_16_R2_B_scaffold_499_15
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(14042..14647)
----------------- DNA (606bp) protein (202aa) |
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG04_PELHB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ52018.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
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SCN18_25_1_16_R2_B_scaffold_499_16
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
14650..15630
----------------- DNA (981bp) protein (327aa) |
Drug/metabolite transporter n=2 Tax=Oligotropha carboxidovorans RepID=B6JDE7_OLICO
Uncharacterized protein {ECO:0000313|EMBL:KJC61126.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
drug/metabolite transporter
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SCN18_25_1_16_R2_B_scaffold_499_17
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(15609..17432)
----------------- DNA (1824bp) protein (608aa) |
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q216F0_RHOPB
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ABD87736.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
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SCN18_25_1_16_R2_B_scaffold_499_18
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(17749..19338)
----------------- DNA (1590bp) protein (530aa) |
Putative multidrug resistance protein B (Drug efflux transporter, EmrB-like) n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SW63_9BRAD
MFS transporter {ECO:0000313|EMBL:KJC45954.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
emrB; multidrug resistance protein B
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SCN18_25_1_16_R2_B_scaffold_499_19
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(19378..20634)
----------------- DNA (1257bp) protein (419aa) |
Secretion protein HlyD family protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QFP4_RHOPT
secretion protein HlyD family protein
Secretion protein HlyD family protein {ECO:0000313|EMBL:ACF02557.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
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SCN18_25_1_16_R2_B_scaffold_499_20
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
20922..21563
----------------- DNA (642bp) protein (214aa) |
Transcriptional regulatory protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89FS6_BRADU
TetR family transcriptional regulator {ECO:0000313|EMBL:KJC52865.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
transcriptional regulator
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SCN18_25_1_16_R2_B_scaffold_499_21
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(21575..22888)
----------------- DNA (1314bp) protein (438aa) |
Extensin-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJE4_NITHX
extensin-like protein
Extensin-like protein {ECO:0000313|EMBL:ABE63653.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
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SCN18_25_1_16_R2_B_scaffold_499_22
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
23434..23832
----------------- DNA (399bp) protein (133aa) |
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07TN6_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ04698.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
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SCN18_25_1_16_R2_B_scaffold_499_23
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(23862..24053)
----------------- DNA (192bp) protein (64aa) |
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SCN18_25_1_16_R2_B_scaffold_499_24
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
24542..26098
----------------- DNA (1557bp) protein (519aa) |
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJE3_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63654.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
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SCN18_25_1_16_R2_B_scaffold_499_25
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
26262..26477
----------------- DNA (216bp) protein (72aa) |
ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DDR0_BRAJP
ABC transporter substrate-binding protein
ABC transporter permease {ECO:0000313|EMBL:KGT81464.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
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