ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

SCN18_25_1_16_R2_B_scaffold_212_42

Organism: SCN18_25_1_16_R2_B_SCNPILOT_CONT_300_BF_Rhizobiales_62_47-related_62_30

near complete RP 51 / 55 MC: 2 BSCG 51 / 51 ASCG 11 / 38
Location: comp(40514..41134)

Top 3 Functional Annotations

Value Algorithm Source
leuD; 3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33) similarity KEGG
DB: KEGG
  • Identity: 53.9
  • Coverage: 204.0
  • Bit_score: 218
  • Evalue 1.30e-54
3-isopropylmalate dehydratase, small subunit n=1 Tax=Variovorax paradoxus B4 RepID=T1XLP1_VARPD similarity UNIREF
DB: UNIREF100
  • Identity: 53.9
  • Coverage: 204.0
  • Bit_score: 218
  • Evalue 4.70e-54
Uncharacterized protein {ECO:0000313|EMBL:KIZ39711.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.8
  • Coverage: 206.0
  • Bit_score: 299
  • Evalue 2.20e-78

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNpilot_BF_INOC_Bordetella_67_10 → SCNpilot_BF_INOC_Bordetella_67_10 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 621
GTGCAGCCTTTCACACGCATCCAGGGCATCGCAGCACCGCTGCTGCGCGACAATGTCGATACCGATACGATTATCCGTGTCGAACGGCTTTTCAACGCGGTGCCGCGAGCCGATCTCGGGCTGTACTGTCTGGAGAGTCTGCGTCATTTGTCGGATGGGTCGCCCGATCCGGAGTTCTTCCAGAACGATCTGCGTTACCAGCGTGCCTCGATCCTGCTGTGTGGCCGGAATTTCGGCTGTGGCAGCGCGCGCGAAGGCGCGGTGTGGGCGCTGGCCGGCATGGGGATCCGCTGTATTATCGCACCGAGCGTCGCCGATCTGTTTGCGGCGAACTGCTTCCAGAACGGACTTCTGGTCTTCACGCTAGATCAGGCGATAATCGAACACCTTGCTGTCGGCGTTGCGGCCGATCCTGCGGGTCGTCCGCTGGTGGTCGATCTCGAGCGTTGTCAGACAGGGTTTGCCGACGGCGAGCCTATCCCGTTCTCCGTTGCCGCTCGACGTCGCGAAGCACTGCTTGAAGGTCTTGACGAGATCGACCTGACACTCAAGCAGCAATCAAAGATACACGACTTTCGGCAACGGGACGGTGAGTTGCGTCCCTGGATTTATACGGCGTGA
PROTEIN sequence
Length: 207
VQPFTRIQGIAAPLLRDNVDTDTIIRVERLFNAVPRADLGLYCLESLRHLSDGSPDPEFFQNDLRYQRASILLCGRNFGCGSAREGAVWALAGMGIRCIIAPSVADLFAANCFQNGLLVFTLDQAIIEHLAVGVAADPAGRPLVVDLERCQTGFADGEPIPFSVAARRREALLEGLDEIDLTLKQQSKIHDFRQRDGELRPWIYTA*