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SCN18_25_1_16_R2_B_scaffold_212_43

Organism: SCN18_25_1_16_R2_B_SCNPILOT_CONT_300_BF_Rhizobiales_62_47-related_62_30

near complete RP 51 / 55 MC: 2 BSCG 51 / 51 ASCG 11 / 38
Location: comp(41137..42516)

Top 3 Functional Annotations

Value Algorithm Source
3-isopropylmalate dehydratase large subunit {ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.- {ECO:0000256|SAAS:SAAS00274346};; EC=4.2.1.33 {ECO:0000256|SAAS:SAAS00091399};; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.5
  • Coverage: 460.0
  • Bit_score: 733
  • Evalue 1.80e-208
leuC; isopropylmalate isomerase large subunit (EC:4.2.1.33) similarity KEGG
DB: KEGG
  • Identity: 61.0
  • Coverage: 464.0
  • Bit_score: 588
  • Evalue 1.40e-165
3-isopropylmalate dehydratase large subunit 1 n=2 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=LEUC1_BRADU similarity UNIREF
DB: UNIREF100
  • Identity: 61.0
  • Coverage: 464.0
  • Bit_score: 588
  • Evalue 5.00e-165

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Taxonomy

SCNpilot_BF_INOC_Bordetella_67_10 → SCNpilot_BF_INOC_Bordetella_67_10 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1380
GTGAGCGGCCAGACGATGTATGAGAAAATCTGGCGATCTCACGAGATCGTCGACCTGGGGGATGGCTTCTCTCTTCTTCATGTCGACCGGCACATGTTGCATGATGGGTCGGGGCCGGTTCTTGCCCGCCTCAAGGAGCGCGGGCGAAGCGTTTCCCAACCCGACCTTTGCTTCGCAACCCTCGATCACGTGGTTTCGACTGCGCCTGGACGGCCGGTGACGTCCGACAACAGGCGTCGTACCATCGCGTCATTGCGTGACGGCGTCGCAGAGGCTGGAATCCGGTTTTTCGATATCGGTCGCACGGGGCAGGGCATCGTGCATGTCATTGGTCCTGAACTCGGCATCAGCCTTCCGGGAACTGTGGTCGTCTGCGCGGACAGTCATACCTGCACGCATGGCGGCATGGGCGCCATGGGCTTCGGAATCGGATCGACTGAAGCCGAGCATGTGCTGGCAACACAAACGATCGTTCAGGCAAAACTCCGGACGATGAGAGTTACTTTCGTCGGAAATGCCGGTGACGGTGTCACGGCGAAGGATCTTATTCTGGCCGCCGTTGGACAGCTTGGTTCCGCCGGAGGCAACGGATATGCGGTCGAATACGCCGGCAGAGCGATCCAGACGCTCGAGGTGGAAGCTCGCTTGACGCTCTGCAATCTGTCGATCGAGCTTGGTGCGAAGGTCGGGATGGTGGCGCCAGACGAGAAAACCTTCGACTATCTGGCAGGGCGGCAATTTTCGCCGAAAAATGAGCTTTGGAACAGGGCGCTCGCGTCCTGGCGTGATCTTCCATCAGACCACGACGCGATTTTCGACGCCGAGATCGAGGTAGACATTTCGCATTTGAAACCCAAGATCACGTGGGGCACGAGCCCGGCGCATGTCATGGATATCGACGGCATCGTCCCGGATCCTTCGTCAACGGGACATCGGAATGCGGTGCAGTATATGGACGTTGTTCCCGGGCGACCGCTGGTCGGGCTGAAGGTCGACTGGGTTTTCATTGGATCGTGTACCAACAGCCGTATTTCGGACCTGCGCATCGCTGCCAATATTGTCGGGGGGCGCAAGGTTGCAGATCATGTGTCGGCCTGGATCGTGCCCGGCTCCGAAAACGTCAAACGGCAGGCGGAATCCGAAGGCCTTGATCGCATCTTCAAGGAGAGTGGGTTCGAATGGCGCGAGCCCGGATGCTCCCTGTGCCTTGCTGCGAATGGCGAAGCCGTTCCGCCTGGCGCACGGGCGGTCTCGACCTCGAATCGCAATTTCGTCGGCCGTCAGGGGCCAGGCGCGCGAACCCATCTGGCCAGTCCGGCTGTGGCCGCTGCCTCGGCCATTCGCGGTGTGATCAGCGATTTCCGGACCATGAAGGATTGA
PROTEIN sequence
Length: 460
VSGQTMYEKIWRSHEIVDLGDGFSLLHVDRHMLHDGSGPVLARLKERGRSVSQPDLCFATLDHVVSTAPGRPVTSDNRRRTIASLRDGVAEAGIRFFDIGRTGQGIVHVIGPELGISLPGTVVVCADSHTCTHGGMGAMGFGIGSTEAEHVLATQTIVQAKLRTMRVTFVGNAGDGVTAKDLILAAVGQLGSAGGNGYAVEYAGRAIQTLEVEARLTLCNLSIELGAKVGMVAPDEKTFDYLAGRQFSPKNELWNRALASWRDLPSDHDAIFDAEIEVDISHLKPKITWGTSPAHVMDIDGIVPDPSSTGHRNAVQYMDVVPGRPLVGLKVDWVFIGSCTNSRISDLRIAANIVGGRKVADHVSAWIVPGSENVKRQAESEGLDRIFKESGFEWREPGCSLCLAANGEAVPPGARAVSTSNRNFVGRQGPGARTHLASPAVAAASAIRGVISDFRTMKD*