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SCN18_13_7_16_R3_B_scaffold_672

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R3_B_scaffold_672_1
SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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1..351
DNA (351bp) protein (117aa)
Protein involved in gliding motility GldH n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIJ8_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:GAO42866.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
gliding motility protein GldH
SCN18_13_7_16_R3_B_scaffold_672_2
CN-SCN_Microbacterium_37x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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348..3140
DNA (2793bp) protein (931aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI000373761A
preprotein translocase subunit SecD
Uncharacterized protein {ECO:0000313|EMBL:AGW40413.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
SCN18_13_7_16_R3_B_scaffold_672_3
SCNPILOT_EXPT_1000_BF_Microbacterium_69_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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3296..3571
DNA (276bp) protein (92aa)
Arginase family protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RXW2_LEIAQ
Arginase family protein {ECO:0000313|EMBL:ERK73364.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
Arginase/agmatinase/formiminoglutamase
SCN18_13_7_16_R3_B_scaffold_672_4
CN-SCN_Microbacterium_200x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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3721..4161
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI00038293BF
Arginase family protein {ECO:0000313|EMBL:ERK73364.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
arginase
SCN18_13_7_16_R3_B_scaffold_672_5
SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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comp(4266..5426)
DNA (1161bp) protein (387aa)
Imidazolonepropionase {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112}; EC=3.5.2.7 {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112};; Imidazolone-5-propionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00372}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI00035EDA8F
hutI; putative imidazolonepropionase
SCN18_13_7_16_R3_B_scaffold_672_6
CN-SCN_Microbacterium_37x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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comp(5426..7099)
DNA (1674bp) protein (558aa)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
urocanate hydratase (EC:4.2.1.49)
urocanate hydratase n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI0003741DA1
SCN18_13_7_16_R3_B_scaffold_672_7
CN-SCN_Microbacterium_37x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(7199..8788)
DNA (1590bp) protein (530aa)
Histidine ammonia-lyase {ECO:0000256|RuleBase:RU004479, ECO:0000256|SAAS:SAAS00083026}; EC=4.3.1.3 {ECO:0000256|RuleBase:RU004479, ECO:0000256|SAAS:SAAS00083026};; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
histidine ammonia-lyase n=1 Tax=Leifsonia sp. 109 RepID=UPI00036B396E
hutH; histidine ammonia-lyase
SCN18_13_7_16_R3_B_scaffold_672_8
CN-SCN_Microbacterium_37x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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8910..9668
DNA (759bp) protein (253aa)
IclR family transcriptional regulator n=1 Tax=Microbacteriaceae RepID=UPI000365AFC5
IclR family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:AGW40454.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
SCN18_13_7_16_R3_B_scaffold_672_9
SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, Actinobacteria, Actinobacteria, Bacteria

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comp(9687..10751)
DNA (1065bp) protein (355aa)
PDZ/DHR/GLGF domain protein (Fragment) n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RQR9_LEIAQ
PDZ/DHR/GLGF domain protein {ECO:0000313|EMBL:ERK70924.1}; Flags: Fragment;; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
putative trypsin-like serine protease
SCN18_13_7_16_R3_B_scaffold_672_10
SCNPILOT_EXPT_1000_BF_Microbacterium_69_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

10847..11245
DNA (399bp) protein (133aa)
membrane protein n=1 Tax=Agromyces subbeticus RepID=UPI0003B2FB71
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY00810.1}; TaxID=1494608 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. PAMC25486.;"
SCN18_13_7_16_R3_B_scaffold_672_11
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11318..12064)
DNA (747bp) protein (249aa)
Metallophosphoesterase n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UGY0_CELFN
Metallophosphoesterase {ECO:0000313|EMBL:KHD73612.1}; TaxID=1869 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
metallophosphoesterase
SCN18_13_7_16_R3_B_scaffold_672_12
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(12156..12623)
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Microbacteriaceae RepID=UPI000376A2FD
acetyl transferase
Putative acetyl transferase {ECO:0000313|EMBL:CAQ02408.1}; TaxID=31964 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM; 20744 / JCM 9667 / LMG 2889 / C-1) (Corynebacterium sepedonicum).;"
SCN18_13_7_16_R3_B_scaffold_672_13
CN-SCN_Microbacterium_27x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(12659..13111)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI0003729135
Uncharacterized protein {ECO:0000313|EMBL:ERK70060.1}; Flags: Fragment;; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
SCN18_13_7_16_R3_B_scaffold_672_14
SCNPILOT_EXPT_1000_BF_Microbacterium_69_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(13111..14694)
DNA (1584bp) protein (528aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI000382C298
p49; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAT89894.1}; TaxID=281090 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. xyli (strain CTCB07).;"
SCN18_13_7_16_R3_B_scaffold_672_15
Microbacterium testaceum_SCNpilot_P_inoc_Microbacterium_70_36, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14895..16862
DNA (1968bp) protein (656aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI000370B546
ATP-dependent RNA helicase
Uncharacterized protein {ECO:0000313|EMBL:AGW40449.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
SCN18_13_7_16_R3_B_scaffold_672_16
CN-SCN_Microbacterium_200x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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comp(16980..17861)
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI00035FDA04
aminoglycoside phosphotransferase
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:ACZ88473.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
SCN18_13_7_16_R3_B_scaffold_672_17
CN-SCN_Microbacterium_37x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

18207..19574
DNA (1368bp) protein (456aa)
glutamate decarboxylase n=1 Tax=Leifsonia sp. 109 RepID=UPI00037520A0
L-2,4-diaminobutyrate decarboxylase
Uncharacterized protein {ECO:0000313|EMBL:AGW40447.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
SCN18_13_7_16_R3_B_scaffold_672_18
SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19631..19885)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2R2T7_LEIAQ
Uncharacterized protein {ECO:0000313|EMBL:ERK69575.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
SCN18_13_7_16_R3_B_scaffold_672_19
SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19897..20061)
DNA (165bp) protein (55aa)
hypothetical protein n=1 Tax=Microbacteriaceae RepID=UPI000372A888
Uncharacterized protein {ECO:0000313|EMBL:ERK69576.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
SCN18_13_7_16_R3_B_scaffold_672_20
Microbacterium testaceum_SCNpilot_P_inoc_Microbacterium_70_36, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20133..20585)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Microbacteriaceae RepID=UPI0003628BB9
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ERK69577.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
MarR family transcriptional regulator
SCN18_13_7_16_R3_B_scaffold_672_21
CN-SCN_Microbacterium_37x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

20809..21822
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI00036E6EFB
Kinase domain protein {ECO:0000313|EMBL:ERK69578.1}; Flags: Fragment;; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
serine/threonine protein kinase
Displaying 21 items

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