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SCN18_14_9_16_R1_B_scaffold_3090

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_3090_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..477
DNA (477bp) protein (159aa)
ABC-type nitrate/sulfonate/bicarbonate transportsystems periplasmic components-like protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XC49_RHIFR
Nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein-like protein {ECO:0000313|EMBL:EYR80897.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein-like protein
SCN18_14_9_16_R1_B_scaffold_3090_2
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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831..1991
DNA (1161bp) protein (387aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ01_9RHIZ
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EYR80896.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RND family efflux transporter MFP subunit
SCN18_14_9_16_R1_B_scaffold_3090_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2111..5422
DNA (3312bp) protein (1104aa)
Nodulation protein NolG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUF0_9RHIZ
Nodulation protein NolG {ECO:0000313|EMBL:EYR80895.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transport transmembrane protein
SCN18_14_9_16_R1_B_scaffold_3090_4
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5575..6258
DNA (684bp) protein (228aa)
Regulator of biofilm formation Fnr family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZV2_9RHIZ
Regulator of biofilm formation Fnr family {ECO:0000313|EMBL:EYR80894.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
regulator of Biofilm formation Fnr Family
SCN18_14_9_16_R1_B_scaffold_3090_5
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6259..6870)
DNA (612bp) protein (204aa)
Urease accessory protein UreG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D8L7_9RHIZ
Urease accessory protein UreG {ECO:0000256|HAMAP-Rule:MF_01389}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ureG; urease accessory protein UreG
SCN18_14_9_16_R1_B_scaffold_3090_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6965..7627)
DNA (663bp) protein (221aa)
Urease accessory protein UreF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D484_9RHIZ
Urease accessory protein UreF {ECO:0000256|HAMAP-Rule:MF_01385}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ureF; putative urease accessory protein UreF
SCN18_14_9_16_R1_B_scaffold_3090_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7620..9008)
DNA (1389bp) protein (463aa)
Diguanylate cyclase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJS0_9RHIZ
Diguanylate cyclase {ECO:0000313|EMBL:EYR80890.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ureE; protein UreE
SCN18_14_9_16_R1_B_scaffold_3090_8
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9111..10634)
DNA (1524bp) protein (508aa)
Urease subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01953, ECO:0000256|SAAS:SAAS00033844};; Urea amidohydrolase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Urease subunit alpha n=2 Tax=Agrobacterium RepID=URE1_AGRT5
ureC; urease alpha subunit
Displaying 8 items

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