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SCN18_14_9_16_R1_B_scaffold_3099

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_3099_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..78)
DNA (78bp) protein (26aa)
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_3099_2
unknown

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190..294
DNA (105bp) protein (35aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_3099_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(252..1130)
DNA (879bp) protein (293aa)
Cytochrome c oxidase subunit 3 {ECO:0000313|EMBL:EYR79561.1}; EC=1.9.3.1 {ECO:0000313|EMBL:EYR79561.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cytochrome B562 n=1 Tax=Rhizobium giardinii RepID=UPI000364EBDD
ctaE; cytochrome c oxidase subunit III
SCN18_14_9_16_R1_B_scaffold_3099_4
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1190..1795)
DNA (606bp) protein (202aa)
Cytochrome c oxidase assembly protein CtaG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ60_9RHIZ
Cytochrome c oxidase assembly protein CtaG {ECO:0000256|HAMAP-Rule:MF_00155}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ctaG; cytochrome C oxidase assembly protein
SCN18_14_9_16_R1_B_scaffold_3099_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1798..1938)
DNA (141bp) protein (47aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D7Y9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79559.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_3099_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1938..2921)
DNA (984bp) protein (328aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Protoheme IX farnesyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3I2_9RHIZ
ctaB; protoheme IX farnesyltransferase
SCN18_14_9_16_R1_B_scaffold_3099_7
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3134..4801)
DNA (1668bp) protein (556aa)
Cytochrome c oxidase subunit 1 {ECO:0000313|EMBL:EYR79557.1}; EC=1.9.3.1 {ECO:0000313|EMBL:EYR79557.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Cytochrome c oxidase subunit 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZG9_9RHIZ
coxA; cytochrome c oxidase subunit I
SCN18_14_9_16_R1_B_scaffold_3099_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4821..5705)
DNA (885bp) protein (295aa)
Cytochrome c oxidase subunit 2 {ECO:0000256|RuleBase:RU004024}; EC=1.9.3.1 {ECO:0000256|RuleBase:RU004024};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative cytochrome c oxidase subunit 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJ29_9RHIZ
cytochrome c oxidase subunit II
SCN18_14_9_16_R1_B_scaffold_3099_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6111..6641
DNA (531bp) protein (177aa)
Invasion protein B-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ55_9RHIZ
Invasion protein B-like protein {ECO:0000313|EMBL:EYR79555.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
invasion associated locus B
SCN18_14_9_16_R1_B_scaffold_3099_10
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6646..6969)
DNA (324bp) protein (108aa)
PemK family protein n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DGF1_9GAMM
growth inhibitor PemK
Growth inhibitor PemK {ECO:0000313|EMBL:AHE96983.1}; TaxID=713587 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio thiocyanoxidans ARh 4.;"
SCN18_14_9_16_R1_B_scaffold_3099_11
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6966..7187)
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FUM7_RHIML
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIT05294.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCN18_14_9_16_R1_B_scaffold_3099_12
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7368..8300
DNA (933bp) protein (311aa)
Protein TldD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D7Y4_9RHIZ
Protein TldD {ECO:0000313|EMBL:EYR79554.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tldD; hypothetical protein
Displaying 12 items

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