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SCN18_14_9_16_R1_B_scaffold_3410

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_3410_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..480)
DNA (480bp) protein (160aa)
5-amino-6-(5-phosphoribosylamino)uracil reductase n=1 Tax=Rhizobium leguminosarum RepID=UPI00036B3761
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
riboflavin biosynthesis protein RibD
SCN18_14_9_16_R1_B_scaffold_3410_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(481..960)
DNA (480bp) protein (160aa)
Transcriptional repressor NrdR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C8I3_9RHIZ
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nrdR; transcriptional regulator NrdR
SCN18_14_9_16_R1_B_scaffold_3410_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(973..2271)
DNA (1299bp) protein (433aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Serine hydroxymethyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERE1_9RHIZ
glyA; serine hydroxymethyltransferase
SCN18_14_9_16_R1_B_scaffold_3410_4
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2463..3764)
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2HQH1_9RHIZ
Amidase {ECO:0000313|EMBL:KGD99289.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
Peptidoglycan-binding domain 1 protein
SCN18_14_9_16_R1_B_scaffold_3410_5
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4084..4596)
DNA (513bp) protein (171aa)
MarR family transcriptional regulator n=1 Tax=Rhizobium giardinii RepID=UPI00037A08E1
Transcriptional regulator {ECO:0000313|EMBL:EYR81462.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
MarR family transcriptional regulator
SCN18_14_9_16_R1_B_scaffold_3410_6
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4728..5219)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZK2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81463.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transmemrbane protein
SCN18_14_9_16_R1_B_scaffold_3410_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5321..6337
DNA (1017bp) protein (339aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Delta-aminolevulinic acid dehydratase HemB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EWM0_9RHIZ
hemB; protein HemB
SCN18_14_9_16_R1_B_scaffold_3410_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6497..6961
DNA (465bp) protein (155aa)
Putative transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BZX8_9RHIZ
Putative transmembrane protein {ECO:0000313|EMBL:EYR80674.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_3410_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7068..7652
DNA (585bp) protein (195aa)
Putative arginyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194293}; Short=Arginyltransferase {ECO:0000256|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:0000256|HAMAP-Rule:MF_00689};; EC=2.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194290};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative arginyl-tRNA--protein transferase Ate n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EI20_9RHIZ
arginyl-tRNA-protein transferase
Displaying 9 items

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