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SCN18_14_9_16_R1_B_scaffold_3621

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_3621_1
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..747)
DNA (747bp) protein (249aa)
Alcohol dehydrogenase GroES domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVU3_9RHIZ
Alcohol dehydrogenase GroES domain-containing protein {ECO:0000313|EMBL:EYR78881.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dehydrogenase
SCN18_14_9_16_R1_B_scaffold_3621_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(749..1351)
DNA (603bp) protein (201aa)
Ribose transport system permease protein RbsC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFT8_9RHIZ
Ribose transport system permease protein RbsC {ECO:0000313|EMBL:EYR78880.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
monosaccharide-transporting ATPase
SCN18_14_9_16_R1_B_scaffold_3621_3
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1691..3244)
DNA (1554bp) protein (518aa)
Ribose import ATP-binding protein RbsA {ECO:0000313|EMBL:EYR78879.1}; EC=3.6.3.17 {ECO:0000313|EMBL:EYR78879.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Ribose import ATP-binding protein RbsA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EX48_9RHIZ
sugar ABC transporter
SCN18_14_9_16_R1_B_scaffold_3621_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3318..4307)
DNA (990bp) protein (330aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D043_9RHIZ
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:EYR78878.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
abc transporter periplasmic binding protein
SCN18_14_9_16_R1_B_scaffold_3621_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4519..4965)
DNA (447bp) protein (149aa)
L-fucose mutarotase FucU n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXR4_9RHIZ
Fucose dissimilation pathway protein FucU {ECO:0000313|EMBL:EYR78877.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fucose binding protein
SCN18_14_9_16_R1_B_scaffold_3621_6
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4992..6011)
DNA (1020bp) protein (340aa)
Pyridoxal 4-dehydrogenase Pld n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD92_9RHIZ
Putative oxidoreductase {ECO:0000313|EMBL:EYR78876.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aldo/keto reductase
SCN18_14_9_16_R1_B_scaffold_3621_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6185..7063
DNA (879bp) protein (293aa)
GntR family transcriptional regulator n=1 Tax=Rhizobium giardinii RepID=UPI00036A4D93
Putative transcriptional regulator, GntR family {ECO:0000313|EMBL:EYR78875.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transcriptional regulator, GntR family
SCN18_14_9_16_R1_B_scaffold_3621_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7083..7883)
DNA (801bp) protein (267aa)
4-hydroxy-2-oxo-heptane-1,7-dioate aldolase HpcH {ECO:0000313|EMBL:EYR78873.1}; EC=4.1.2.52 {ECO:0000313|EMBL:EYR78873.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
4-hydroxy-2-oxo-heptane-1,7-dioate aldolase HpcH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4H4_9RHIZ
HpcH/HpaI aldolase/citrate lyase family protein
SCN18_14_9_16_R1_B_scaffold_3621_9
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7953..8663)
DNA (711bp) protein (237aa)
Succinate-semialdehyde dehydrogenase GabD {ECO:0000313|EMBL:EYR78872.1}; EC=1.2.1.79 {ECO:0000313|EMBL:EYR78872.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gabD5; Succinate-semialdehyde dehydrogenase [NADP(+)] GabD (EC:1.2.1.79)
Succinate-semialdehyde dehydrogenase GabD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZU5_9RHIZ
Displaying 9 items

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