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SCN18_14_9_16_R1_B_scaffold_3831

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_3831_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..627
DNA (627bp) protein (209aa)
ribD; riboflavin biosynthesis protein RibD (EC:3.5.4.26 1.1.1.193)
Riboflavin biosynthesis protein RibD n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X0W9_RHIFR
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCN18_14_9_16_R1_B_scaffold_3831_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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627..1244
DNA (618bp) protein (206aa)
Riboflavin synthase RibE {ECO:0000313|EMBL:EYR81457.1}; EC=2.5.1.9 {ECO:0000313|EMBL:EYR81457.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Riboflavin synthase RibE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVV7_9RHIZ
ribE; riboflavin synthase, alpha subunit
SCN18_14_9_16_R1_B_scaffold_3831_3
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1379..2515
DNA (1137bp) protein (379aa)
Diguanylate cyclase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFV4_9RHIZ
Diguanylate cyclase {ECO:0000313|EMBL:EYR81456.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
diguanylate cyclase
SCN18_14_9_16_R1_B_scaffold_3831_4
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2662..3123
DNA (462bp) protein (154aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4U4_9RHIZ
ribH2; 6,7-dimethyl-8-ribityllumazine synthase 1
SCN18_14_9_16_R1_B_scaffold_3831_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3120..3605
DNA (486bp) protein (162aa)
N utilization substance protein B homolog n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVW1_9RHIZ
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nusB; transcription antitermination protein NusB
SCN18_14_9_16_R1_B_scaffold_3831_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3618..4844
DNA (1227bp) protein (409aa)
MFS permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFV8_9RHIZ
MFS permease {ECO:0000313|EMBL:EYR81451.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
MFS permease
SCN18_14_9_16_R1_B_scaffold_3831_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5037..6986
DNA (1950bp) protein (650aa)
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
K(+)-insensitive pyrophosphate-energized proton pump n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EX64_9RHIZ
V-type H(+)-translocating pyrophosphatase
Displaying 7 items

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